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    Atg13 autophagy related 13 [ Mus musculus (house mouse) ]

    Gene ID: 51897, updated on 26-Apr-2016
    Official Symbol
    Atg13provided by MGI
    Official Full Name
    autophagy related 13provided by MGI
    Primary source
    MGI:MGI:1196429
    See related
    Ensembl:ENSMUSG00000027244 Vega:OTTMUSG00000014308
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Harbi1; D2Ertd391e; 1110053A20Rik
    Orthologs
    Location:
    2; 2 E1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 2 NC_000068.7 (91674612..91710598, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (91514782..91550733, complement)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene zinc finger protein 408 Neighboring gene Rho GTPase activating protein 1 Neighboring gene harbinger transposase derived 1 Neighboring gene dyskeratosis congenita 1, dyskerin homolog pseudogene Neighboring gene autophagy/beclin 1 regulator 1

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein kinase binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein kinase binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    autophagosome assembly IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    autophagosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    autophagy IEA
    Inferred from Electronic Annotation
    more info
     
    mitophagy in response to mitochondrial depolarization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    mitophagy in response to mitochondrial depolarization ISO
    Inferred from Sequence Orthology
    more info
     
    positive regulation of protein targeting to mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    ATG1/ULK1 kinase complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    ATG1/ULK1 kinase complex IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    ATG1/ULK1 kinase complex ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IEA
    Inferred from Electronic Annotation
    more info
     
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    pre-autophagosomal structure IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    autophagy-related protein 13
    Names
    ATG13 autophagy related 13 homolog

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145528.3NP_663503.1  autophagy-related protein 13

      See identical proteins and their annotated locations for NP_663503.1

      Status: VALIDATED

      Source sequence(s)
      AI574380, AK149672, AK171440, AL714023
      Consensus CDS
      CCDS16438.1
      UniProtKB/Swiss-Prot
      Q91YI1
      Related
      ENSMUSP00000076081, OTTMUSP00000015123, ENSMUST00000076803, OTTMUST00000033752
      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p3 C57BL/6J

      Range
      91674612..91710598 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006499889.2XP_006499952.1  

      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13
    2. XM_006499892.2XP_006499955.1  

      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13
    3. XM_006499888.2XP_006499951.1  

      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13
    4. XM_006499887.2XP_006499950.1  

      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13
    5. XM_006499891.2XP_006499954.1  

      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13
    6. XM_006499890.2XP_006499953.1  

      See identical proteins and their annotated locations for XP_006499953.1

      UniProtKB/Swiss-Prot
      Q91YI1
      Related
      ENSMUSP00000028678, OTTMUSP00000015122, ENSMUST00000028678, OTTMUST00000033751
      Conserved Domains (1) summary
      pfam10033
      Location:17195
      ATG13; Autophagy-related protein 13

    Alternate Mm_Celera

    Genomic

    1. AC_000024.1 Alternate Mm_Celera

      Range
      93064084..93099352 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)