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    HCP5 HLA complex P5 (non-protein coding) [ Homo sapiens (human) ]

    Gene ID: 10866, updated on 8-Aug-2016
    Official Symbol
    HCP5provided by HGNC
    Official Full Name
    HLA complex P5 (non-protein coding)provided by HGNC
    Primary source
    HGNC:HGNC:21659
    See related
    Ensembl:ENSG00000206337 HPRD:05245; MIM:604676
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    P5-1; 6S2650E; D6S2650E
    Location:
    6p21.3
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    108 current GRCh38.p7 (GCF_000001405.33) 6 NC_000006.12 (31463180..31465809)
    105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (31430957..31433586)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene MHC class I polypeptide-related sequence A Neighboring gene major histocompatibility complex, class I, X (pseudogene) Neighboring gene uncharacterized LOC102725068 Neighboring gene HLA complex group 26 (non-protein coding)

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    NHGRI GWAS Catalog

    Description
    A genome-wide association study of psoriasis and psoriatic arthritis identifies new disease loci.
    NHGRI GWA Catalog
    A whole-genome association study of major determinants for allopurinol-related Stevens-Johnson syndrome and toxic epidermal necrolysis in Japanese patients.
    NHGRI GWA Catalog
    Clozapine-induced agranulocytosis is associated with rare HLA-DQB1 and HLA-B alleles.
    NHGRI GWA Catalog
    Common genetic variation and the control of HIV-1 in humans.
    NHGRI GWA Catalog
    Genetic variation in the HLA region is associated with susceptibility to herpes zoster.
    NHGRI GWA Catalog
    Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
    NHGRI GWA Catalog
    Genome-wide association study of Stevens-Johnson Syndrome and Toxic Epidermal Necrolysis in Europe.
    NHGRI GWA Catalog
    Genomewide association study of an AIDS-nonprogression cohort emphasizes the role played by HLA genes (ANRS Genomewide Association Study 02).
    NHGRI GWA Catalog
    HLA-B*5701 genotype is a major determinant of drug-induced liver injury due to flucloxacillin.
    NHGRI GWA Catalog
    Identification of novel genetic Loci associated with thyroid peroxidase antibodies and clinical thyroid disease.
    NHGRI GWA Catalog
    Novel associations for hypothyroidism include known autoimmune risk loci.
    NHGRI GWA Catalog
    The major genetic determinants of HIV-1 control affect HLA class I peptide presentation.
    NHGRI GWA Catalog
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Other Names

    • HLA class I histocompatibility antigen protein P5
    • HLA complex protein P5
    • MHC class I region ORF

    Gene Ontology Provided by GOA

    Process Evidence Code Pubs
    defense response TAS
    Traceable Author Statement
    more info
    PubMed 

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_040662.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK290875, BX640979, DA501560, L06175
      Related
      ENST00000541196

    RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 108 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p7 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p7 Primary Assembly

      Range
      31463180..31465809
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p7 ALT_REF_LOCI_2

    Genomic

    1. NT_113891.3 Reference GRCh38.p7 ALT_REF_LOCI_2

      Range
      2940505..2943134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p7 ALT_REF_LOCI_5

    Genomic

    1. NT_167247.2 Reference GRCh38.p7 ALT_REF_LOCI_5

      Range
      2806319..2807782
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p7 ALT_REF_LOCI_7

    Genomic

    1. NT_167249.2 Reference GRCh38.p7 ALT_REF_LOCI_7

      Range
      2762429..2765058
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate CHM1_1.1

    Genomic

    1. NC_018917.2 Alternate CHM1_1.1

      Range
      31433038..31435667
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)