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Ccm2 cerebral cavernous malformation 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 305505, updated on 19-Jul-2014
Official Symbol
Ccm2provided by RGD
Official Full Name
cerebral cavernous malformation 2provided by RGD
Primary source
RGD:1308067
See related
Ensembl:ENSRNOG00000007643
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
See Ccm2 in MapViewer
Location:
14q21
Exon count :
13
Annotation release Status Assembly Chr Location
104 current Rnor_5.0 (GCF_000001895.4) 14 NC_005113.3 (80446382..80492853)

Chromosome 14 - NC_005113.3Genomic Context describing neighboring genes Neighboring gene myosin IG Neighboring gene uncharacterized LOC102547700 Neighboring gene uncharacterized LOC102547795 Neighboring gene NAC alpha domain containing Neighboring gene transforming growth factor beta regulator 4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
blood vessel development ISO
Inferred from Sequence Orthology
more info
 
blood vessel endothelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 
blood vessel endothelial cell differentiation ISO
Inferred from Sequence Orthology
more info
 
cell-cell junction organization IEA
Inferred from Electronic Annotation
more info
 
cell-cell junction organization ISO
Inferred from Sequence Orthology
more info
 
endothelial cell development IEA
Inferred from Electronic Annotation
more info
 
endothelial cell development ISO
Inferred from Sequence Orthology
more info
 
endothelial tube morphogenesis IEA
Inferred from Electronic Annotation
more info
 
endothelial tube morphogenesis ISO
Inferred from Sequence Orthology
more info
 
heart development ISO
Inferred from Sequence Orthology
more info
 
in utero embryonic development IEA
Inferred from Electronic Annotation
more info
 
in utero embryonic development ISO
Inferred from Sequence Orthology
more info
 
inner ear development IEA
Inferred from Electronic Annotation
more info
 
inner ear development ISO
Inferred from Sequence Orthology
more info
 
multicellular organism growth IEA
Inferred from Electronic Annotation
more info
 
multicellular organism growth ISO
Inferred from Sequence Orthology
more info
 
pericardium development IEA
Inferred from Electronic Annotation
more info
 
pericardium development ISO
Inferred from Sequence Orthology
more info
 
vasculature development ISO
Inferred from Sequence Orthology
more info
 
vasculogenesis IEA
Inferred from Electronic Annotation
more info
 
vasculogenesis ISO
Inferred from Sequence Orthology
more info
 
venous blood vessel morphogenesis IEA
Inferred from Electronic Annotation
more info
 
venous blood vessel morphogenesis ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
protein complex IEA
Inferred from Electronic Annotation
more info
 
protein complex ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
malcavernin
Names
malcavernin

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001126275.1NP_001119747.1  malcavernin

    See proteins identical to NP_001119747.1

    Status: PROVISIONAL

    Source sequence(s)
    BC160889
    UniProtKB/TrEMBL
    B1H273
    Related
    ENSRNOP00000010070, ENSRNOT00000010070
    Conserved Domains (2) summary
    cd13166
    Location:43216
    Blast Score: 698
    PTB_CCM2; Cerebral cavernous malformation 2 FERM domain C-lobe
    cd13516
    Location:291386
    Blast Score: 427
    HHD_CCM2; harmonin-homology domain (harmonin_N_like domain) of malcavernin (CCM2)

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_5.0 Primary Assembly

Genomic

  1. NC_005113.3 

    Range
    80446382..80492853
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006251320.1XP_006251382.1  

    Conserved Domains (2) summary
    cd13166
    Location:10158
    Blast Score: 582
    PTB_CCM2; Cerebral cavernous malformation 2 FERM domain C-lobe
    cd13516
    Location:233328
    Blast Score: 427
    HHD_CCM2; harmonin-homology domain (harmonin_N_like domain) of malcavernin (CCM2)
  2. XM_006251319.1XP_006251381.1  

    See proteins identical to XP_006251381.1

    Conserved Domains (2) summary
    cd13166
    Location:37210
    Blast Score: 696
    PTB_CCM2; Cerebral cavernous malformation 2 FERM domain C-lobe
    cd13516
    Location:285380
    Blast Score: 427
    HHD_CCM2; harmonin-homology domain (harmonin_N_like domain) of malcavernin (CCM2)
  3. XM_006251318.1XP_006251380.1  

    See proteins identical to XP_006251380.1

    Conserved Domains (2) summary
    cd13166
    Location:37210
    Blast Score: 696
    PTB_CCM2; Cerebral cavernous malformation 2 FERM domain C-lobe
    cd13516
    Location:285380
    Blast Score: 427
    HHD_CCM2; harmonin-homology domain (harmonin_N_like domain) of malcavernin (CCM2)
  4. XM_006251317.1XP_006251379.1  

    Conserved Domains (2) summary
    cd13166
    Location:79252
    Blast Score: 695
    PTB_CCM2; Cerebral cavernous malformation 2 FERM domain C-lobe
    cd13516
    Location:327422
    Blast Score: 425
    HHD_CCM2; harmonin-homology domain (harmonin_N_like domain) of malcavernin (CCM2)

Alternate Rn_Celera

Genomic

  1. AC_000082.1 

    Range
    80300228..80345851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Supplemental Content

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