Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    a nonagouti [ Mus musculus (house mouse) ]

    Gene ID: 50518, updated on 26-Jun-2016
    Official Symbol
    aprovided by MGI
    Official Full Name
    nonagoutiprovided by MGI
    Primary source
    MGI:MGI:87853
    See related
    Ensembl:ENSMUSG00000027596 Ensembl:ENSMUSG00000084897 Vega:OTTMUSG00000015981; Vega:OTTMUSG00000016002
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    As; ASP; A<y>; ASIP
    Orthologs
    Location:
    2 H1; 2 76.83 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (154950204..155051012)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (154839306..154876748)

    Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene hnRNP-associated with lethal yellow Neighboring gene eukaryotic translation initiation factor 2, subunit 2 (beta) Neighboring gene predicted gene, 39965 Neighboring gene uncharacterized LOC108168806 Neighboring gene RIKEN cDNA 2310005A03 gene Neighboring gene predicted gene, 39966 Neighboring gene S-adenosylhomocysteine hydrolase

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Melanogenesis, organism-specific biosystem (from KEGG)
      Melanogenesis, organism-specific biosystemCutaneous melanin pigment plays a critical role in camouflage, mimicry, social communication, and protection against harmful effects of solar radiation. Melanogenesis is under complex regulatory cont...
    • Melanogenesis, conserved biosystem (from KEGG)
      Melanogenesis, conserved biosystemCutaneous melanin pigment plays a critical role in camouflage, mimicry, social communication, and protection against harmful effects of solar radiation. Melanogenesis is under complex regulatory cont...

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    melanocortin receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    type 3 melanocortin receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    type 4 melanocortin receptor binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    adult feeding behavior IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    adult feeding behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    generation of precursor metabolites and energy IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    genetic imprinting IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    melanin biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    melanosome organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    melanosome transport IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    pigmentation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of molecular function, epigenetic IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Preferred Names
    agouti-signaling protein
    Names
    agouti coat color protein
    agouti signal protein
    agouti switch protein
    non-agouti

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_015770.3NP_056585.2  agouti-signaling protein precursor

      See identical proteins and their annotated locations for NP_056585.2

      Status: VALIDATED

      Source sequence(s)
      AL805955, L06941
      Consensus CDS
      CCDS16941.1
      UniProtKB/Swiss-Prot
      Q03288
      Related
      ENSMUSP00000029123, OTTMUSP00000017061, ENSMUST00000029123, OTTMUST00000038037
      Conserved Domains (1) summary
      smart00792
      Location:6127
      Agouti; Agouti protein

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p4 C57BL/6J

    Genomic

    1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

      Range
      154950204..155051012
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017319113.1XP_017174602.1  

    2. XM_017319114.1XP_017174603.1  

    3. XM_017319116.1XP_017174605.1  

    4. XM_017319110.1XP_017174599.1  

    5. XM_017319112.1XP_017174601.1  

    6. XM_017319115.1XP_017174604.1  

    7. XM_017319117.1XP_017174606.1  

    8. XM_017319119.1XP_017174608.1  

    9. XM_017319120.1XP_017174609.1  

    10. XM_017319121.1XP_017174610.1  

    11. XM_017319111.1XP_017174600.1  

    12. XM_011239689.2XP_011237991.1  

      See identical proteins and their annotated locations for XP_011237991.1

      Conserved Domains (4) summary
      pfam02337
      Location:192
      Gag_p10; Retroviral GAG p10 protein
      pfam00098
      Location:609626
      zf-CCHC; Zinc knuckle
      pfam00607
      Location:383583
      Gag_p24; gag gene protein p24 (core nucleocapsid protein)
      pfam14787
      Location:647681
      zf-CCHC_5; GAG-polyprotein viral zinc-finger
    13. XM_017319109.1XP_017174598.1  

    14. XM_011239691.1XP_011237993.1  

      Conserved Domains (1) summary
      smart00792
      Location:45166
      Agouti; Agouti protein
    15. XM_011239690.2XP_011237992.1  

      See identical proteins and their annotated locations for XP_011237992.1

      UniProtKB/TrEMBL
      Q3TZL0
      Related
      ENSMUSP00000122157, OTTMUSP00000017086, ENSMUST00000130870, OTTMUST00000038107
      Conserved Domains (2) summary
      cd09851
      Location:490567
      HTLV-1-like_HR1-HR2; heptad repeat 1-heptad repeat 2 region (ectodomain) of the transmembrane subunit of human T-cell leukemia virus type 1 (HTLV-1), and related domains
      pfam00429
      Location:12627
      TLV_coat; ENV polyprotein (coat polyprotein)