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    supt5h suppressor of Ty 5 homolog (S. cerevisiae) [ Danio rerio (zebrafish) ]

    Gene ID: 64275, updated on 18-Jul-2015
    Official Symbol
    supt5hprovided by ZNC
    Official Full Name
    suppressor of Ty 5 homolog (S. cerevisiae)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-001207-1
    See related
    Ensembl:ENSDARG00000042724; Vega:OTTDARG00000020682
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    fog; Spt5; foggy; fb37g01; fb95e05; wu:fb37g01; wu:fb95e05; wu:fc10f02; etID10129.15; etID37101.15
    Orthologs
    See supt5h in MapViewer
    Location:
    chromosome: 15
    Exon count:
    31
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 15 NC_007126.6 (20428862..20459520)
    103 previous assembly Zv9 (GCF_000002035.4) 15 NC_007126.5 (19326229..19356894)

    Chromosome 15 - NC_007126.6Genomic Context describing neighboring genes Neighboring gene pleckstrin homology domain containing, family G (with RhoGef domain) member 2 Neighboring gene interleukin 15, like Neighboring gene ribonuclease T2, like Neighboring gene cytochrome c oxidase subunit VIIa polypeptide 1 (muscle)

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    DNA binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Component Evidence Code Pubs
    DSIF complex ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    nucleus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    transcription elongation factor SPT5
    Names
    DRB sensitivity-inducing factor large subunit
    DSIF large subunit
    protein foggy
    transcription elongation regulator foggy

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_131673.2NP_571748.2  transcription elongation factor SPT5

      Status: VALIDATED

      Source sequence(s)
      CR626887
      UniProtKB/TrEMBL
      F1QD27
      Related
      ENSDARP00000062675, OTTDARP00000021327, ENSDART00000062676, OTTDART00000025960
      Conserved Domains (12) summary
      cd09888
      Location:177264
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG0250
      Location:175316
      NusG; Transcription antitermination factor NusG [Transcription]
      COG5164
      Location:333963
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:275312
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06082
      Location:419469
      KOW_Spt5_2; KOW domain of Spt5, repeat 2
      cd06083
      Location:470520
      KOW_Spt5_3; KOW domain of Spt5, repeat 3
      cd06084
      Location:596638
      KOW_Spt5_4; KOW domain of Spt5, repeat 4
      cd06085
      Location:700749
      KOW_Spt5_5; KOW domain of Spt5, repeat 5
      cd06086
      Location:10261082
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam04731
      Location:843968
      Caudal_act; Caudal like protein activation region
      pfam11942
      Location:84171
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
      pfam12273
      Location:772896
      RCR; Chitin synthesis regulation, resistance to Congo red

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007126.6 Reference GRCz10 Primary Assembly

      Range
      20428862..20459520
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005157529.2XP_005157586.1  

      See identical proteins and their annotated locations for XP_005157586.1

      Conserved Domains (12) summary
      cd09888
      Location:179266
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG0250
      Location:177318
      NusG; Transcription antitermination factor NusG [Transcription]
      COG5164
      Location:335965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:277314
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06082
      Location:421471
      KOW_Spt5_2; KOW domain of Spt5, repeat 2
      cd06083
      Location:472522
      KOW_Spt5_3; KOW domain of Spt5, repeat 3
      cd06084
      Location:598640
      KOW_Spt5_4; KOW domain of Spt5, repeat 4
      cd06085
      Location:702751
      KOW_Spt5_5; KOW domain of Spt5, repeat 5
      cd06086
      Location:10281084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam04731
      Location:845970
      Caudal_act; Caudal like protein activation region
      pfam11942
      Location:84173
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
      pfam12273
      Location:774898
      RCR; Chitin synthesis regulation, resistance to Congo red
    2. XM_005157530.2XP_005157587.1  

      See identical proteins and their annotated locations for XP_005157587.1

      Conserved Domains (12) summary
      cd09888
      Location:179266
      NGN_Euk; Eukaryotic N-Utilization Substance G (NusG) N-terminal (NGN) domain, including plant KTF1 (KOW domain-containing Transcription Factor 1)
      COG0250
      Location:177318
      NusG; Transcription antitermination factor NusG [Transcription]
      COG5164
      Location:335965
      SPT5; Transcription elongation factor [Transcription]
      cd06081
      Location:277314
      KOW_Spt5_1; KOW domain of Spt5, repeat 1
      cd06082
      Location:421471
      KOW_Spt5_2; KOW domain of Spt5, repeat 2
      cd06083
      Location:472522
      KOW_Spt5_3; KOW domain of Spt5, repeat 3
      cd06084
      Location:598640
      KOW_Spt5_4; KOW domain of Spt5, repeat 4
      cd06085
      Location:702751
      KOW_Spt5_5; KOW domain of Spt5, repeat 5
      cd06086
      Location:10281084
      KOW_Spt5_6; KOW domain of Spt5, repeat 6
      pfam04731
      Location:845970
      Caudal_act; Caudal like protein activation region
      pfam11942
      Location:84173
      Spt5_N; Spt5 transcription elongation factor, acidic N-terminal
      pfam12273
      Location:774898
      RCR; Chitin synthesis regulation, resistance to Congo red