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    Glycam1 glycosylation dependent cell adhesion molecule 1 [ Mus musculus (house mouse) ]

    Gene ID: 14663, updated on 26-Jun-2015
    Official Symbol
    Glycam1provided by MGI
    Official Full Name
    glycosylation dependent cell adhesion molecule 1provided by MGI
    Primary source
    MGI:MGI:95759
    See related
    Ensembl:ENSMUSG00000022491
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    MC26; Sgp50; glyCAM-1
    See Glycam1 in Epigenomics, MapViewer
    Location:
    15 F3; 15 59.03 cM
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 15 NC_000081.6 (103562759..103565081, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (103393193..103395509, complement)

    Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 1B, Ca2+-calmodulin dependent Neighboring gene protein phosphatase 1, regulatory (inhibitor) subunit 1A Neighboring gene predicted gene, 41407 Neighboring gene hydroxyacyl-Coenzyme A dehydrogenase/3-ketoacyl-Coenzyme A thiolase/enoyl-Coenzyme A hydratase (trifunctional protein), beta subunit pseudogene Neighboring gene mucin-like 1

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (2) 

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    cell adhesion molecule binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    sulfate binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    cell adhesion IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    extracellular region IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    glycosylation-dependent cell adhesion molecule 1
    Names
    glycosylation-dependent cell adhesion molecule 1
    GlyCAM 1
    Sele ligand
    endothelial ligand FOR L-selectin
    sulfated 50 kDa glycoprotein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001289587.1NP_001276516.1  glycosylation-dependent cell adhesion molecule 1 isoform 1 precursor

      See identical proteins and their annotated locations for NP_001276516.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
      Source sequence(s)
      AC108858, BE947771
      Conserved Domains (1) summary
      pfam05242
      Location:19108
      GLYCAM-1; Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1)
    2. NM_008134.3NP_032160.1  glycosylation-dependent cell adhesion molecule 1 isoform 2 precursor

      See identical proteins and their annotated locations for NP_032160.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region compared to variant 1. The encoded isoform (1) is shorter and has a distinct C-terminus compared to isoform 1.
      Source sequence(s)
      AC108858, AK021358, BE947771
      Consensus CDS
      CCDS27905.1
      UniProtKB/Swiss-Prot
      Q02596
      Related
      ENSMUSP00000023134, ENSMUST00000023134
      Conserved Domains (1) summary
      pfam05242
      Location:19151
      GLYCAM-1; Glycosylation-dependent cell adhesion molecule 1 (GlyCAM-1)

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000081.6 Reference GRCm38.p3 C57BL/6J

      Range
      103562759..103565081
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000037.1 Alternate Mm_Celera

      Range
      105720732..105723054
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)