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CCNL1 cyclin L1 [ Homo sapiens (human) ]

Gene ID: 57018, updated on 7-Aug-2014
Official Symbol
CCNL1provided by HGNC
Official Full Name
cyclin L1provided by HGNC
Primary source
HGNC:20569
Locus tag
BM-001
See related
HPRD:10814; MIM:613384
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ANIA6A; BM-001; PRO1073; ania-6a
See CCNL1 in Epigenomics, MapViewer
Location:
3q25.31
Exon count:
14
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 3 NC_000003.12 (157146364..157160693, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 3 NC_000003.11 (156864291..156878482, complement)

Chromosome 3 - NC_000003.12Genomic Context describing neighboring genes Neighboring gene leucine, glutamate and lysine rich 1 Neighboring gene CASP2 and RIPK1 domain containing adaptor with death domain pseudogene Neighboring gene long intergenic non-protein coding RNA 880 Neighboring gene long intergenic non-protein coding RNA 881 Neighboring gene RNA, 5S ribosomal pseudogene 146 Neighboring gene keratin 18 pseudogene 34

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

NHGRI GWAS Catalog

Description
Genome-wide association analysis of eating disorder-related symptoms, behaviors, and personality traits.
NHGRI GWA Catalog
Genome-wide meta-analysis for severe diabetic retinopathy.
NHGRI GWA Catalog
New loci associated with birth weight identify genetic links between intrauterine growth and adult height and metabolism.
NHGRI GWA Catalog
The chromosome 3q25 genomic region is associated with measures of adiposity in newborns in a multi-ethnic genome-wide association study.
NHGRI GWA Catalog
Variants in ADCY5 and near CCNL1 are associated with fetal growth and birth weight.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein kinase binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA processing IEA
Inferred from Electronic Annotation
more info
 
regulation of cyclin-dependent protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nuclear speck IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
cyclin-L1
Names
cyclin-L1
cyclin-L
cyclin L gamma
cyclin L ania-6a

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020307.2NP_064703.1  cyclin-L1

    See proteins identical to NP_064703.1

    Status: VALIDATED

    Source sequence(s)
    AK122738, BC007081, BX647554
    Consensus CDS
    CCDS3178.1
    UniProtKB/Swiss-Prot
    Q9UK58
    Conserved Domains (1) summary
    cd00043
    Location:82154
    Blast Score: 145
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000003.12 

    Range
    157146364..157160693
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005247647.2XP_005247704.1  

    See proteins identical to XP_005247704.1

    UniProtKB/TrEMBL
    C9JPL0
    Conserved Domains (1) summary
    cd00043
    Location:82154
    Blast Score: 142
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  2. XM_006713710.1XP_006713773.1  

    See proteins identical to XP_006713773.1

    Conserved Domains (1) summary
    cd00043
    Location:82154
    Blast Score: 145
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  3. XM_005247648.1XP_005247705.1  

    Conserved Domains (1) summary
    cd00043
    Location:42109
    Blast Score: 140
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  4. XM_005247650.1XP_005247707.1  

    See proteins identical to XP_005247707.1

    UniProtKB/Swiss-Prot
    Q9UK58
    Conserved Domains (1) summary
    cd00043
    Location:137
    Blast Score: 101
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  5. XM_005247649.1XP_005247706.1  

    Conserved Domains (1) summary
    cd00043
    Location:1158
    Blast Score: 129
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  6. XM_006713711.1XP_006713774.1  

    See proteins identical to XP_006713774.1

    Conserved Domains (1) summary
    cd00043
    Location:82154
    Blast Score: 137
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...
  7. XM_005247651.1XP_005247708.1  

    See proteins identical to XP_005247708.1

    UniProtKB/Swiss-Prot
    Q9UK58
    Conserved Domains (1) summary
    cd00043
    Location:82154
    Blast Score: 137
    CYCLIN; Cyclin box fold. Protein binding domain functioning in cell-cycle and transcription control. Present in cyclins, TFIIB and Retinoblastoma (RB).The cyclins consist of 8 classes of cell cycle regulators that regulate cyclin dependent kinases (CDKs). TFIIB ...

Alternate HuRef

Genomic

  1. AC_000135.1 

    Range
    154261958..154274873
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018914.2 

    Range
    156828587..156841484
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)