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PRP42 Prp42p [ Saccharomyces cerevisiae S288c ]

Gene ID: 851821, updated on 6-Jul-2014
Gene symbol
PRP42
Gene description
Prp42p
Primary source
SGD:S000002643
Locus tag
YDR235W
Gene type
protein coding
RNA name
Prp42p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
MUD16; SNU65
See PRP42 in MapViewer
Location:
chromosome: IV
Exon count :
1
Sequence:
Chromosome: IV; NC_001136.10 (933504..935138)

Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene Rtn1p Neighboring gene homoaconitate hydratase LYS4 Neighboring gene riboflavin kinase Neighboring gene mitochondrial 54S ribosomal protein YmL7/YmL5

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
RNA binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
U1 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U2-type prespliceosome IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 
Names
Prp42p
NP_010521.1
  • U1 snRNP protein involved in splicing, required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001136.10 

    Range
    933504..935138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001180543.1NP_010521.1  Prp42p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_010521.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q03776
    Conserved Domains (1) summary
    COG5107
    Location:56183
    Blast Score: 103
    RNA14; Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

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