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PRP40 Prp40p [ Saccharomyces cerevisiae S288c ]

Gene ID: 853857, updated on 7-Sep-2014
Gene symbol
PRP40
Gene description
Prp40p
Primary source
SGD:S000001495
Locus tag
YKL012W
Gene type
protein coding
RNA name
Prp40p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
See PRP40 in MapViewer
Location:
chromosome: XI
Exon count:
1
Sequence:
Chromosome: XI; NC_001143.9 (418310..420061)

Chromosome XI - NC_001143.9Genomic Context describing neighboring genes Neighboring gene Urb1p Neighboring gene Arc19p Neighboring gene Cce1p Neighboring gene putative ubiquitin-protein ligase UFD4

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

  • Spliceosome, organism-specific biosystem (from KEGG)
    Spliceosome, organism-specific biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
  • Spliceosome, conserved biosystem (from KEGG)
    Spliceosome, conserved biosystemAfter transcription, eukaryotic mRNA precursors contain protein-coding exons and noncoding introns. In the following splicing, introns are excised and exons are joined by a macromolecular complex, th...
Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
U1 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U2-type prespliceosome IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
nucleus IMP
Inferred from Mutant Phenotype
more info
PubMed 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
Names
Prp40p
NP_012913.3
  • U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001143.9 

    Range
    418310..420061
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001179578.3NP_012913.3  Prp40p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_012913.3

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    P33203
    Conserved Domains (4) summary
    smart00441
    Location:203256
    Blast Score: 125
    FF; Contains two conserved F residues
    COG5104
    Location:1583
    Blast Score: 2186
    PRP40; Splicing factor [RNA processing and modification]
    cd00201
    Location:431
    Blast Score: 127
    WW; Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other ...
    pfam01846
    Location:134185
    Blast Score: 124
    FF; FF domain