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SMD1 Smd1p [ Saccharomyces cerevisiae S288c ]

Gene ID: 852964, updated on 22-Feb-2015
Gene symbol
SMD1
Gene description
Smd1p
Primary source
SGD:S000003306
Locus tag
YGR074W
Gene type
protein coding
RNA name
Smd1p
RefSeq status
PROVISIONAL
Organism
Saccharomyces cerevisiae S288c (strain: S288c)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
Also known as
SPP92
See SMD1 in MapViewer
Location:
chromosome: VII
Exon count:
1
Sequence:
Chromosome: VII; NC_001139.9 (635712..636152)

Chromosome VII - NC_001139.9Genomic Context describing neighboring genes Neighboring gene Env11p Neighboring gene Upf3p Neighboring gene Prp38p Neighboring gene mitochondrial 54S ribosomal protein YmL25 Neighboring gene Pex8p

Products Interactant Other Gene Complex Source Pubs Description

Homology

Gene Ontology Provided by GO

Function Evidence Code Pubs
RNA binding IEA
Inferred from Electronic Annotation
more info
 
mRNA binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
RNA splicing IEA
Inferred from Electronic Annotation
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
mRNA splicing, via spliceosome IMP
Inferred from Mutant Phenotype
more info
PubMed 
mRNA splicing, via spliceosome IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
U1 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
U2-type prespliceosome IDA
Inferred from Direct Assay
more info
PubMed 
U4/U6 x U5 tri-snRNP complex IDA
Inferred from Direct Assay
more info
PubMed 
U5 snRNP IDA
Inferred from Direct Assay
more info
PubMed 
commitment complex IPI
Inferred from Physical Interaction
more info
PubMed 
cytosol IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 
Names
Smd1p
NP_011588.3
  • Core Sm protein Sm D1; part of heteroheptameric complex (with Smb1p, Smd2p, Smd3p, Sme1p, Smx3p, and Smx2p) that is part of the spliceosomal U1, U2, U4, and U5 snRNPs; relocalizes to the cytosol in response to hypoxia; homolog of human Sm D1; protein abundance increases in response to DNA replication stress

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_001139.9 Reference assembly

    Range
    635712..636152
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001181203.3NP_011588.3  Smd1p [Saccharomyces cerevisiae S288c]

    See proteins identical to NP_011588.3

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    Q02260
    Conserved Domains (1) summary
    cl00259
    Location:2111
    Sm_like; Sm and related proteins