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    plxna3 plexin A3 [ Danio rerio (zebrafish) ]

    Gene ID: 567422, updated on 25-Jul-2015
    Official Symbol
    plxna3provided by ZNC
    Official Full Name
    plexin A3provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-070613-1
    See related
    Ensembl:ENSDARG00000007172; Vega:OTTDARG00000026300
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    plexina3
    Orthologs
    See plxna3 in MapViewer
    Location:
    chromosome: 8
    Exon count:
    33
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 8 NC_007119.6 (9184358..9531931, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 8 NC_007119.5 (9767776..10115210, complement)

    Chromosome 8 - NC_007119.6Genomic Context describing neighboring genes Neighboring gene solute carrier family 6 (neurotransmitter transporter), member 8 Neighboring gene pregnancy up-regulated nonubiquitous CaM kinase Neighboring gene protein tyrosine phosphatase, non-receptor type 18 Neighboring gene MON1 secretory trafficking family member Ba Neighboring gene GRIP1 associated protein 1

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    axon extension IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    axon extension IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    branching morphogenesis of a nerve IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    branching morphogenesis of a nerve IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    embryonic skeletal joint morphogenesis IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    motor neuron axon guidance IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    motor neuron axon guidance IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of collateral sprouting in absence of injury IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    signal transduction IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    integral component of membrane IEA
    Inferred from Electronic Annotation
    more info
     
    membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    membrane IEA
    Inferred from Electronic Annotation
    more info
     
    plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    Preferred Names
    plexin A3
    Names
    set
    sidetracked
    vermicelli
    vmc

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001098489.1NP_001091959.1  plexin A3 precursor

      See identical proteins and their annotated locations for NP_001091959.1

      Status: PROVISIONAL

      Source sequence(s)
      EF538743
      UniProtKB/Swiss-Prot
      B0S5N4
      Related
      ENSDARP00000043999, OTTDARP00000028063, ENSDART00000044000, OTTDART00000034865
      Conserved Domains (8) summary
      cd12790
      Location:13141886
      RasGAP_plexin_A; Ras-GTPase Activating Domain of type A plexins
      smart00423
      Location:807852
      PSI; domain found in Plexins, Semaphorins and Integrins
      cd00603
      Location:11561225
      IPT_PCSR; IPT domain of Plexins and Cell Surface Receptors (PCSR) and related proteins . This subgroup contains IPT domains of plexins, receptors, like the plasminogen-related growth factor receptors, the hepatocyte growth factor-scatter factors, and the ...
      cd01180
      Location:861955
      IPT_plexin_repeat1; First repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      cd01181
      Location:10441144
      IPT_plexin_repeat3; Third repeat of the IPT domain of Plexins and Cell Surface Receptors (PCSR) . Plexins are involved in the regulation of cell proliferation and of cellular adhesion and repulsion receptors. In general, there are three copies of the IPT domain present ...
      pfam01437
      Location:511554
      PSI; Plexin repeat
      cl15674
      Location:9571042
      IPT; Immunoglobulin-like fold, Plexins, Transcription factors (IPT). IPTs are also known as Transcription factor ImmunoGlobin (TIG) domains. They are present in intracellular transcription factors, cell surface receptors (such as plexins and scatter factor ...
      cl15693
      Location:30510
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007119.6 Reference GRCz10 Primary Assembly

      Range
      9184358..9531931
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303765.1XP_009302040.1  

      Conserved Domains (2) summary
      pfam01437
      Location:511554
      PSI; Plexin repeat
      cl15693
      Location:30510
      Sema; The Sema domain, a protein interacting module, of semaphorins and plexins