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Atoh7 atonal homolog 7 (Drosophila) [ Mus musculus (house mouse) ]

Gene ID: 53404, updated on 19-Sep-2014
Official Symbol
Atoh7provided by MGI
Official Full Name
atonal homolog 7 (Drosophila)provided by MGI
Primary source
MGI:MGI:1355553
See related
Ensembl:ENSMUSG00000036816
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Math5; bHLHa13
See Atoh7 in Epigenomics, MapViewer
Location:
10 B4; 10 32.54 cM
Exon count:
2
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 10 NC_000076.6 (63098020..63101284)

Chromosome 10 - NC_000076.6Genomic Context describing neighboring genes Neighboring gene phenazine biosynthesis-like protein domain containing 2 Neighboring gene uncharacterized LOC102632251 Neighboring gene phenazine biosynthesis-like protein domain containing 1 Neighboring gene myopalladin Neighboring gene hect domain and RLD 4 Neighboring gene uncharacterized LOC102632395

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
cell differentiation IEA
Inferred from Electronic Annotation
more info
 
circadian rhythm IMP
Inferred from Mutant Phenotype
more info
PubMed 
entrainment of circadian clock IMP
Inferred from Mutant Phenotype
more info
PubMed 
multicellular organismal development IEA
Inferred from Electronic Annotation
more info
 
nervous system development IEA
Inferred from Electronic Annotation
more info
 
neural retina development IMP
Inferred from Mutant Phenotype
more info
 
neural retina development ISO
Inferred from Sequence Orthology
more info
 
optic nerve development ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
protein atonal homolog 7
Names
protein atonal homolog 7
helix-loop-helix protein mATH-5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_016864.1NP_058560.1  protein atonal homolog 7

    See proteins identical to NP_058560.1

    Status: PROVISIONAL

    Source sequence(s)
    AF071223
    Consensus CDS
    CCDS23896.1
    UniProtKB/Swiss-Prot
    Q9Z2E5
    Related
    ENSMUSP00000039801, ENSMUST00000044059
    Conserved Domains (1) summary
    cd00083
    Location:5198
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000076.6 

    Range
    63098020..63101284
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006513889.1XP_006513952.1  

    Conserved Domains (1) summary
    cd00083
    Location:5198
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...

Alternate Mm_Celera

Genomic

  1. AC_000032.1 

    Range
    64200808..64201424
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)