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Fus fused in sarcoma RNA binding protein [ Rattus norvegicus (Norway rat) ]

Gene ID: 317385, updated on 5-Apr-2015
Official Symbol
Fusprovided by RGD
Official Full Name
fused in sarcoma RNA binding proteinprovided by RGD
Primary source
RGD:1308864
See related
Ensembl:ENSRNOG00000023360
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Orthologs
See Fus in MapViewer
Location:
1q36
Exon count:
15
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (199412807..199426705)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (206435510..206449423)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene K (lysine) acetyltransferase 8 Neighboring gene protease, serine, 8 Neighboring gene protease, serine, 36 Neighboring gene PYD and CARD domain containing Neighboring gene uncharacterized LOC102555841 Neighboring gene tripartite motif containing 72, E3 ubiquitin protein ligase

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
estrogen receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
identical protein binding IEA
Inferred from Electronic Annotation
more info
 
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
ionotropic glutamate receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
myosin V binding IPI
Inferred from Physical Interaction
more info
PubMed 
nucleotide binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding IEA
Inferred from Electronic Annotation
more info
 
poly(A) RNA binding ISO
Inferred from Sequence Orthology
more info
 
retinoid X receptor binding IPI
Inferred from Physical Interaction
more info
PubMed 
thyroid hormone receptor binding IDA
Inferred from Direct Assay
more info
PubMed 
transcription coactivator activity ISO
Inferred from Sequence Orthology
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
cellular response to calcium ion IDA
Inferred from Direct Assay
more info
PubMed 
regulation of nucleic acid-templated transcription ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
dendrite IDA
Inferred from Direct Assay
more info
PubMed 
dendritic spine IDA
Inferred from Direct Assay
more info
PubMed 
dendritic spine head IDA
Inferred from Direct Assay
more info
PubMed 
neuronal cell body IDA
Inferred from Direct Assay
more info
PubMed 
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus ISO
Inferred from Sequence Orthology
more info
 
perikaryon IDA
Inferred from Direct Assay
more info
PubMed 
perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
polysome IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
RNA-binding protein FUS
Names
RNA-binding protein FUS
16) in malignant liposarcoma)
16) malignant liposarcoma
fusion (involved in t(12
fusion, derived from t(12
fusion, derived from t(12;16) malignant liposarcoma

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012137.1NP_001012137.1  RNA-binding protein FUS

    See proteins identical to NP_001012137.1

    Status: PROVISIONAL

    Source sequence(s)
    BC087153
    UniProtKB/TrEMBL
    Q5PQK2
    Related
    ENSRNOP00000033029, ENSRNOT00000031891
    Conserved Domains (3) summary
    COG0724
    Location:257367
    COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
    cd12535
    Location:276361
    RRM_FUS_TAF15; RNA recognition motif in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
    pfam00641
    Location:415442
    zf-RanBP; Zn-finger in Ran binding protein and others

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

    Range
    199412807..199426705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230290.2XP_006230352.1  

    Conserved Domains (3) summary
    COG0724
    Location:256366
    COG0724; RNA-binding proteins (RRM domain) [General function prediction only]
    cd12535
    Location:275360
    RRM_FUS_TAF15; RNA recognition motif in vertebrate fused in Ewing's sarcoma protein (FUS), TATA-binding protein-associated factor 15 (TAF15) and similar proteins
    pfam00641
    Location:414441
    zf-RanBP; Zn-finger in Ran binding protein and others

Alternate Rn_Celera

Genomic

  1. AC_000069.1 Alternate Rn_Celera

    Range
    180227600..180241475
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)