Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    rp2 retinitis pigmentosa 2 (X-linked recessive) [ Danio rerio (zebrafish) ]

    Gene ID: 406755, updated on 16-Apr-2016
    Official Symbol
    rp2provided by ZNC
    Official Full Name
    retinitis pigmentosa 2 (X-linked recessive)provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-040426-2795
    See related
    Ensembl:ENSDARG00000044339 Vega:OTTDARG00000019882
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    zfrp2; zgc:55632; wu:fj10e02; wu:fm72d05
    Orthologs
    Location:
    chromosome: 6
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    104 current GRCz10 (GCF_000002035.5) 6 NC_007117.6 (37536705..37547980, complement)
    103 previous assembly Zv9 (GCF_000002035.4) 6 NC_007117.5 (37462947..37474222, complement)

    Chromosome 6 - NC_007117.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911258 Neighboring gene jade family PHD finger 3 Neighboring gene solute carrier family 9, subfamily A (NHE7, cation proton antiporter 7), member 7 Neighboring gene carbohydrate (N-acetylglucosamine 6-O) sulfotransferase 7

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    GTP binding IEA
    Inferred from Electronic Annotation
    more info
     
    GTPase activator activity IEA
    Inferred from Electronic Annotation
    more info
     
    actin binding IEA
    Inferred from Electronic Annotation
    more info
     
    nucleoside diphosphate kinase activity IEA
    Inferred from Electronic Annotation
    more info
     
    nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    CTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    GTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    UTP biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
     
    cell morphogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
     
    heart looping IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    nucleoside diphosphate phosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    photoreceptor cell development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    photoreceptor cell outer segment organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    pronephros development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    pronephros development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retina development in camera-type eye IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    retina layer formation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_213446.1NP_998611.1  protein XRP2

      See identical proteins and their annotated locations for NP_998611.1

      Status: PROVISIONAL

      Source sequence(s)
      BC046879
      UniProtKB/TrEMBL
      Q802Z6
      Conserved Domains (3) summary
      smart00673
      Location:2764
      CARP; Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product
      pfam07986
      Location:19137
      TBCC; Tubulin binding cofactor C
      cl00335
      Location:221275
      NDPk; Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 104 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007117.6 Reference GRCz10 Primary Assembly

      Range
      37536705..37547980 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_005165978.1XP_005166035.1  

      See identical proteins and their annotated locations for XP_005166035.1

      UniProtKB/TrEMBL
      F1QC45
      Related
      ENSDARP00000120363, OTTDARP00000020309, ENSDART00000136920, OTTDART00000024616
      Conserved Domains (3) summary
      smart00673
      Location:92129
      CARP; Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product
      pfam07986
      Location:84202
      TBCC; Tubulin binding cofactor C
      cl00335
      Location:286340
      NDPk; Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are ...
    2. XM_005165977.1XP_005166034.1  

      See identical proteins and their annotated locations for XP_005166034.1

      UniProtKB/TrEMBL
      F1QC45
      Conserved Domains (3) summary
      smart00673
      Location:92129
      CARP; Domain in CAPs (cyclase-associated proteins) and X-linked retinitis pigmentosa 2 gene product
      pfam07986
      Location:84202
      TBCC; Tubulin binding cofactor C
      cl00335
      Location:286340
      NDPk; Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are ...