Format

Send to:

Choose Destination

Links from PubMed

    • Showing Current items.

    PLA IIIA patatin-like protein 6 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 824660, updated on 8-Jan-2015
    Gene symbol
    PLA IIIA
    Gene description
    patatin-like protein 6
    Primary source
    TAIR:AT3G54950
    Locus tag
    AT3G54950
    Gene type
    protein coding
    RNA name
    patatin-like protein 6
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    patatin-like protein 6; PATATIN-LIKE PROTEIN 7; PLA IIIA; PLP7; T15C9.3
    See PLA IIIA in Map Viewer
    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (20358896..20361233, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene protein phosphatase 2A B'epsilon Neighboring gene Papain family cysteine protease Neighboring gene protein PDI-like 1-3 Neighboring gene D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    • phosphatidylcholine acyl editing, organism-specific biosystem (from BIOCYC)
      phosphatidylcholine acyl editing, organism-specific biosystemSupporting evidence for this pathway in Arabidopsis thaliana col: Enzyme(s) that catalyzes one or more of the key reactions in this pathway were predicted in Arabidopsis thaliana col. [more info] S...
    • phospholipases, organism-specific biosystem (from BIOCYC)
      phospholipases, organism-specific biosystemPhospholipases hydrolyze phospholipids, and are ubiquitous in all organisms. In plants, at least four types of phospholipases have been reported including phospholipase A1 (PLA1), phospholipase A2 ...
    NM_115352.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    acyl-CoA hydrolase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    phospholipase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Process Evidence Code Pubs
    galactolipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    lipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    phospholipid metabolic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of growth IEA
    Inferred from Electronic Annotation
    more info
     
    response to other organism IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    Component Evidence Code Pubs
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Names
    patatin-like protein 6
    NP_191055.1
    • patatin-like protein 6 (PLA IIIA); CONTAINS InterPro DOMAIN/s: Acyl transferase/acyl hydrolase/lysophospholipase (InterPro:IPR016035), Patatin (InterPro:IPR002641); BEST Arabidopsis thaliana protein match is: PATATIN-like protein 6 (TAIR:AT2G39220.1); Has 1058 Blast hits to 1055 proteins in 202 species: Archae - 0; Bacteria - 325; Metazoa - 24; Fungi - 32; Plants - 544; Viruses - 0; Other Eukaryotes - 133 (source: NCBI BLink).

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      20358896..20361233 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_115352.3NP_191055.1  patatin-like protein 6 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_191055.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9SV43
      Conserved Domains (1) summary
      cd07199
      Location:100418
      Pat17_PNPLA8_PNPLA9_like; Patatin-like phospholipase; includes PNPLA8, PNPLA9, and Pat17