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Slc6a5 solute carrier family 6 (neurotransmitter transporter), member 5 [ Rattus norvegicus (Norway rat) ]

Gene ID: 171148, updated on 24-Jan-2015
Official Symbol
Slc6a5provided by RGD
Official Full Name
solute carrier family 6 (neurotransmitter transporter), member 5provided by RGD
Primary source
RGD:621824
See related
Ensembl:ENSRNOG00000031662
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
GLYT2
Summary
glycine transporter [RGD, Feb 2006]
Orthologs
See Slc6a5 in MapViewer
Location:
1q22
Exon count:
18
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (105270418..105336369)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (106333982..106385232)

Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene protein arginine methyltransferase 3 Neighboring gene similar to glyceraldehyde-3-phosphate dehydrogenase Neighboring gene NEL-like 1 (chicken) Neighboring gene 60S ribosomal protein L31-like Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
glycine transmembrane transporter activity IDA
Inferred from Direct Assay
more info
PubMed 
glycine:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 
glycine:sodium symporter activity ISO
Inferred from Sequence Orthology
more info
 
neurotransmitter:sodium symporter activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
glycine import IEA
Inferred from Electronic Annotation
more info
 
glycine import ISO
Inferred from Sequence Orthology
more info
 
glycine transport IDA
Inferred from Direct Assay
more info
PubMed 
neurotransmitter transport IEA
Inferred from Electronic Annotation
more info
 
synaptic transmission, glycinergic IEA
Inferred from Electronic Annotation
more info
 
synaptic transmission, glycinergic ISO
Inferred from Sequence Orthology
more info
 
transmembrane transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
sodium- and chloride-dependent glycine transporter 2
Names
sodium- and chloride-dependent glycine transporter 2
glyT-2
glycine transporter 2
solute carrier family 6 member 5
solute carrier family 6 (neurotransmitter transporter, glycine), member 5

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203334.1NP_976079.1  sodium- and chloride-dependent glycine transporter 2

    See proteins identical to NP_976079.1

    Status: PROVISIONAL

    Source sequence(s)
    L21672
    UniProtKB/Swiss-Prot
    P58295
    Related
    ENSRNOP00000043665, ENSRNOT00000041950
    Conserved Domains (1) summary
    cd11499
    Location:193789
    SLC6sbd_GlyT2; Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005100.4 

    Range
    105270418..105336369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008759311.1XP_008757533.1  

    See proteins identical to XP_008757533.1

    Conserved Domains (1) summary
    cd11499
    Location:206802
    SLC6sbd_GlyT2; Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain
  2. XM_008759310.1XP_008757532.1  

    See proteins identical to XP_008757532.1

    Conserved Domains (1) summary
    cd11499
    Location:206802
    SLC6sbd_GlyT2; Na(+)- and Cl(-)-dependent glycine transporter GlyT2; solute-binding domain

Alternate Rn_Celera

Genomic

  1. AC_000069.1 

    Range
    93839503..93890460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)