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Cd83 CD83 antigen [ Mus musculus (house mouse) ]

Gene ID: 12522, updated on 4-May-2015
Official Symbol
Cd83provided by MGI
Official Full Name
CD83 antigenprovided by MGI
Primary source
MGI:MGI:1328316
See related
Ensembl:ENSMUSG00000015396
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Orthologs
See Cd83 in MapViewer
Location:
13 21.6 cM; 13 A4-5
Exon count:
5
Annotation release Status Assembly Chr Location
105 current GRCm38.p3 (GCF_000001635.23) 13 NC_000079.6 (43785112..43803133)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 13 NC_000079.5 (43880476..43898501)

Chromosome 13 - NC_000079.6Genomic Context describing neighboring genes Neighboring gene ring finger protein 182 Neighboring gene predicted gene, 20751 Neighboring gene predicted gene, 33115 Neighboring gene predicted gene, 33195

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Macrophage markers, organism-specific biosystem (from WikiPathways)
    Macrophage markers, organism-specific biosystemOverview of macrophage markers. Based on [http://www.antibodybeyond.com/reviews/cell-markers/macrophage-marker.htm this list] and tissue-specific gene expression from [http://biogps.org/ GeneAtlas].

Markers

Homology

Clone Names

  • MGC130312, MGC130313

Gene Ontology Provided by MGI

Component Evidence Code Pubs
external side of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
CD83 antigen
Names
CD83 antigen
mCD83

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001289915.1NP_001276844.1  CD83 antigen isoform 2 precursor

    See identical proteins and their annotated locations for NP_001276844.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site in the 3' coding region, resulting in a frameshift and an early stop codon, compared to variant 1. It encodes isoform 2, which is shorter and has a distinct C-terminus, compared to isoform 1.
    Source sequence(s)
    AV359852, BB840485, BC072615
    Conserved Domains (1) summary
    cd00096
    Location:35110
    Ig; Immunoglobulin domain
  2. NM_009856.3NP_033986.1  CD83 antigen isoform 1 precursor

    See identical proteins and their annotated locations for NP_033986.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AK139410, AV359852, BB840485, BC072615
    Consensus CDS
    CCDS26481.1
    UniProtKB/Swiss-Prot
    O88324
    Related
    ENSMUSP00000015540, ENSMUST00000015540
    Conserved Domains (1) summary
    cl11960
    Location:31120
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p3 C57BL/6J

Genomic

  1. NC_000079.6 Reference GRCm38.p3 C57BL/6J

    Range
    43785112..43803133
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000035.1 Alternate Mm_Celera

    Range
    44864330..44882354
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)