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    mtm1 myotubularin 1 [ Danio rerio (zebrafish) ]

    Gene ID: 560881, updated on 27-Jun-2016
    Official Symbol
    mtm1provided by ZNC
    Official Full Name
    myotubularin 1provided by ZNC
    Primary source
    ZFIN:ZDB-GENE-051113-128
    See related
    Ensembl:ENSDARG00000037560
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Danio
    Also known as
    wu:fb19c01; zgc:123266
    Orthologs
    Location:
    chromosome: 7
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    105 current GRCz10 (GCF_000002035.5) 7 NC_007118.6 (25554420..25584761)
    103 previous assembly Zv9 (GCF_000002035.4) 7 NC_007118.5 (26973882..26980255)

    Chromosome 7 - NC_007118.6Genomic Context describing neighboring genes Neighboring gene E3 ubiquitin-protein ligase TRIM39-like Neighboring gene mediator of RNA polymerase II transcription subunit 29-like Neighboring gene myotubularin related protein 1a Neighboring gene CD99 molecule-like 2

    Markers

    Homology

    Clone Names

    • MGC123266

    Gene Ontology Provided by ZFIN

    Function Evidence Code Pubs
    hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
     
    phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein tyrosine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
     
    Process Evidence Code Pubs
    chordate embryonic development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
     
    locomotory behavior IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    muscle cell cellular homeostasis IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    neuromuscular junction development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    regulation of autophagy IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    skeletal muscle fiber development IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    skeletal muscle fiber development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    somatic muscle development IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    cellular_component ND
    No biological Data available
    more info
     
    Preferred Names
    myotubularin
    Names
    fb19c01
    NP_001032773.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001037684.1NP_001032773.1  myotubularin

      See identical proteins and their annotated locations for NP_001032773.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108060
      UniProtKB/TrEMBL
      Q32PM3
      Conserved Domains (2) summary
      pfam06602
      Location:182517
      Myotub-related; Myotubularin-like phosphatase domain
      cd13355
      Location:77176
      PH-GRAM_MTM1; Myotubularian 1 protein (MTM1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 105 details...

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz10 Primary Assembly

    Genomic

    1. NC_007118.6 Reference GRCz10 Primary Assembly

      Range
      25554420..25584761
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009303067.2XP_009301342.1  

      UniProtKB/TrEMBL
      A0A0R4IST5
      Related
      ENSDARP00000139399, ENSDART00000159725
      Conserved Domains (2) summary
      pfam06602
      Location:149484
      Myotub-related; Myotubularin-like phosphatase domain
      cd13355
      Location:44143
      PH-GRAM_MTM1; Myotubularian 1 protein (MTM1) Pleckstrin Homology-Glucosyltransferases, Rab-like GTPase activators and Myotubularins (PH-GRAM) domain