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    Sod3 superoxide dismutase 3, extracellular [ Mus musculus (house mouse) ]

    Gene ID: 20657, updated on 7-Feb-2016
    Official Symbol
    Sod3provided by MGI
    Official Full Name
    superoxide dismutase 3, extracellularprovided by MGI
    Primary source
    MGI:MGI:103181
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EC-SOD; AI314465
    Orthologs
    See Sod3 in Epigenomics, MapViewer
    Location:
    5 C1; 5 27.92 cM
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) 5 NC_000071.6 (52363804..52369738)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 5 NC_000071.5 (52755043..52760977)

    Chromosome 5 - NC_000071.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 9230114K14 gene Neighboring gene RIKEN cDNA C130083M11 gene Neighboring gene coiled-coil domain containing 149 Neighboring gene predicted gene 3519 Neighboring gene leucine-rich repeat LGI family, member 2

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Clone Names

    • MGC13799

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    antioxidant activity IEA
    Inferred from Electronic Annotation
    more info
     
    copper ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    superoxide dismutase activity IDA
    Inferred from Direct Assay
    more info
    PubMed 
    superoxide dismutase activity ISO
    Inferred from Sequence Orthology
    more info
     
    zinc ion binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    Process Evidence Code Pubs
    oxidation-reduction process IEA
    Inferred from Electronic Annotation
    more info
     
    removal of superoxide radicals ISO
    Inferred from Sequence Orthology
    more info
     
    response to copper ion ISO
    Inferred from Sequence Orthology
    more info
     
    response to hypoxia IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    superoxide metabolic process IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with extracellular matrix IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with extracellular matrix ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular region IEA
    Inferred from Electronic Annotation
    more info
     
    extracellular space IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    nucleus ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    extracellular superoxide dismutase [Cu-Zn]
    Names
    extracellular superoxide dismutase
    NP_035565.1

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_011435.3NP_035565.1  extracellular superoxide dismutase [Cu-Zn] precursor

      See identical proteins and their annotated locations for NP_035565.1

      Status: VALIDATED

      Source sequence(s)
      AC102735, U38261
      Consensus CDS
      CCDS19283.1
      UniProtKB/Swiss-Prot
      O09164
      UniProtKB/TrEMBL
      Q542X9
      Conserved Domains (1) summary
      cd00305
      Location:83221
      Cu-Zn_Superoxide_Dismutase; Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the ...

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000071.6 Reference GRCm38.p3 C57BL/6J

      Range
      52363804..52369738
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000027.1 Alternate Mm_Celera

      Range
      49732370..49738292
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)