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Calb1 calbindin 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 83839, updated on 14-Sep-2014
Official Symbol
Calb1provided by RGD
Official Full Name
calbindin 1provided by RGD
Primary source
RGD:69340
See related
Ensembl:ENSRNOG00000007456
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
Also known as
CaBP28K
Summary
binds calcium; activity is vitamin D dependent [RGD, Feb 2006]
See Calb1 in MapViewer
Location:
5q13
Exon count:
11
Annotation release Status Assembly Chr Location
105 current Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (29538380..29562774)
104 previous assembly Rnor_5.0 (GCF_000001895.4) 5 NC_005104.3 (34217930..34242324)

Chromosome 5 - NC_005104.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692312 Neighboring gene transmembrane protein 64 Neighboring gene mitochondrial ribosomal protein L30 Neighboring gene 2,4-dienoyl CoA reductase 1, mitochondrial

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Clone Names

  • MGC93326

Gene Ontology Provided by RGD

Function Evidence Code Pubs
calcium ion binding IDA
Inferred from Direct Assay
more info
PubMed 
calcium ion binding ISO
Inferred from Sequence Orthology
more info
 
calcium ion binding TAS
Traceable Author Statement
more info
PubMed 
vitamin D binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding IEA
Inferred from Electronic Annotation
more info
 
zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cellular response to organic substance IEA
Inferred from Electronic Annotation
more info
 
cellular response to organic substance ISO
Inferred from Sequence Orthology
more info
 
cytosolic calcium ion homeostasis IDA
Inferred from Direct Assay
more info
PubMed 
learning or memory IEP
Inferred from Expression Pattern
more info
PubMed 
locomotory behavior IEA
Inferred from Electronic Annotation
more info
 
locomotory behavior ISO
Inferred from Sequence Orthology
more info
 
long-term memory IEA
Inferred from Electronic Annotation
more info
 
long-term memory ISO
Inferred from Sequence Orthology
more info
 
metanephric collecting duct development IEA
Inferred from Electronic Annotation
more info
 
metanephric connecting tubule development IEA
Inferred from Electronic Annotation
more info
 
metanephric distal convoluted tubule development IEA
Inferred from Electronic Annotation
more info
 
metanephric part of ureteric bud development IEA
Inferred from Electronic Annotation
more info
 
regulation of synaptic plasticity IMP
Inferred from Mutant Phenotype
more info
PubMed 
retina layer formation IEA
Inferred from Electronic Annotation
more info
 
short-term memory IEA
Inferred from Electronic Annotation
more info
 
short-term memory ISO
Inferred from Sequence Orthology
more info
 
vitamin D metabolic process TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
axon IDA
Inferred from Direct Assay
more info
PubMed 
axon ISO
Inferred from Sequence Orthology
more info
 
cell body ISO
Inferred from Sequence Orthology
more info
 
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
cytosol IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
dendrite IEA
Inferred from Electronic Annotation
more info
 
dendrite ISO
Inferred from Sequence Orthology
more info
 
extracellular vesicular exosome IEA
Inferred from Electronic Annotation
more info
 
extracellular vesicular exosome ISO
Inferred from Sequence Orthology
more info
 
intracellular ISO
Inferred from Sequence Orthology
more info
 
neuron projection ISO
Inferred from Sequence Orthology
more info
 
neuronal cell body IEA
Inferred from Electronic Annotation
more info
 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
synapse IEA
Inferred from Electronic Annotation
more info
 
synapse ISO
Inferred from Sequence Orthology
more info
 
Preferred Names
calbindin
Names
calbindin
D-28K
calbindin D28
spot 35 protein
calbindin 1, 28 kD
cerebellar Ca-binding protein spot 35 protein
cerebellar Ca-binding protein, spot 35 protein
vitamin D-dependent calcium-binding protein, avian-type

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031984.2NP_114190.1  calbindin

    See proteins identical to NP_114190.1

    Status: VALIDATED

    Source sequence(s)
    BC081764, CK479935
    UniProtKB/Swiss-Prot
    P07171
    Related
    ENSRNOP00000010845, ENSRNOT00000010845
    Conserved Domains (2) summary
    cd00051
    Location:102171
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:108171
    EF-hand_7; EF-hand domain pair

RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Rnor_6.0 Primary Assembly

Genomic

  1. NC_005104.4 

    Range
    29538380..29562774
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Rn_Celera

Genomic

  1. AC_000073.1 

    Range
    28581243..28605619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)