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    Muc1 mucin 1, cell surface associated [ Rattus norvegicus (Norway rat) ]

    Gene ID: 24571, updated on 30-Jun-2015
    Official Symbol
    Muc1provided by RGD
    Official Full Name
    mucin 1, cell surface associatedprovided by RGD
    Primary source
    RGD:3122
    See related
    Ensembl:ENSRNOG00000020539; Vega:OTTRNOG00000000895
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
    Summary
    an integral membrane protein whose reduction is necessary for embryo implantation [RGD, Feb 2006]
    Orthologs
    See Muc1 in MapViewer
    Location:
    2q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    105 current Rnor_6.0 (GCF_000001895.5) 2 NC_005101.4 (188542691..188547874)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 2 NC_005101.3 (207957206..207962396)

    Chromosome 2 - NC_005101.4Genomic Context describing neighboring genes Neighboring gene thrombospondin 3 Neighboring gene microRNA 92b Neighboring gene tripartite motif-containing 46 Neighboring gene keratinocyte associated protein 2

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Clone Names

    • MGC188069

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    RNA polymerase II core promoter proximal region sequence-specific DNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    molecular_function ND
    No biological Data available
    more info
     
    p53 binding ISO
    Inferred from Sequence Orthology
    more info
     
    transcription cofactor activity ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    apical plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    apical plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     
    cell surface ISO
    Inferred from Sequence Orthology
    more info
     
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    extracellular space ISO
    Inferred from Sequence Orthology
    more info
     
    integral component of membrane NAS
    Non-traceable Author Statement
    more info
    PubMed 
    nuclear chromatin ISO
    Inferred from Sequence Orthology
    more info
     
    plasma membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    mucin-1
    Names
    mucin-1
    Mucin1
    mucin 1, transmembrane

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_012602.1NP_036734.1  mucin-1 precursor

      See identical proteins and their annotated locations for NP_036734.1

      Status: PROVISIONAL

      Source sequence(s)
      BC166505
      UniProtKB/TrEMBL
      B2GV31
      Related
      ENSRNOP00000027850, OTTRNOP00000000728, ENSRNOT00000027850, OTTRNOT00000001358
      Conserved Domains (2) summary
      smart00200
      Location:436552
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
      cl21589
      Location:64272
      Relaxase; Relaxase/Mobilisation nuclease domain

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005101.4 Reference Rnor_6.0 Primary Assembly

      Range
      188542691..188547874
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008761128.1XP_008759350.1  

      Conserved Domains (2) summary
      smart00200
      Location:376492
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin
      pfam04484
      Location:20167
      DUF566; Family of unknown function (DUF566)
    2. XM_006232590.2XP_006232652.1  

      Conserved Domains (1) summary
      smart00200
      Location:376492
      SEA; Domain found in sea urchin sperm protein, enterokinase, agrin

    Alternate Rn_Celera

    Genomic

    1. AC_000070.1 Alternate Rn_Celera

      Range
      168578421..168583038
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)