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Pax9 paired box 9 [ Mus musculus (house mouse) ]

Gene ID: 18511, updated on 19-Jul-2014
Official Symbol
Pax9provided by MGI
Official Full Name
paired box 9provided by MGI
Primary source
MGI:97493
See related
Ensembl:ENSMUSG00000001497; Vega:OTTMUSG00000023206
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pax-9
See Pax9 in Epigenomics, MapViewer
Location:
12 C1; 12 24.53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) 12 NC_000078.6 (56691775..56712824)

Chromosome 12 - NC_000078.6Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102631560 Neighboring gene uncharacterized LOC102631986 Neighboring gene NK2 homeobox 9 Neighboring gene transcriptional adaptor 1 pseudogene Neighboring gene solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 Neighboring gene uncharacterized LOC102631736 Neighboring gene phosphoribosyl pyrophosphate synthetase 1-like 3 Neighboring gene mirror-image polydactyly gene 1 homolog (human)

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
DNA binding IEA
Inferred from Electronic Annotation
more info
 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding transcription factor activity TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
cellular response to growth factor stimulus IDA
Inferred from Direct Assay
more info
PubMed 
endoderm development IMP
Inferred from Mutant Phenotype
more info
PubMed 
face morphogenesis IGI
Inferred from Genetic Interaction
more info
 
multicellular organismal development IEA
Inferred from Electronic Annotation
more info
 
negative regulation of transcription, DNA-templated ISO
Inferred from Sequence Orthology
more info
 
odontogenesis IGI
Inferred from Genetic Interaction
more info
 
organ morphogenesis TAS
Traceable Author Statement
more info
PubMed 
positive regulation of transcription from RNA polymerase II promoter IGI
Inferred from Genetic Interaction
more info
PubMed 
regulation of odontogenesis IGI
Inferred from Genetic Interaction
more info
 
regulation of transcription, DNA-templated TAS
Traceable Author Statement
more info
PubMed 
transcription, DNA-templated IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
nucleus IEA
Inferred from Electronic Annotation
more info
 
transcription factor complex TAS
Traceable Author Statement
more info
PubMed 
Preferred Names
paired box protein Pax-9
Names
paired box protein Pax-9
paired box gene 9

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011041.2NP_035171.1  paired box protein Pax-9

    See proteins identical to NP_035171.1

    Status: PROVISIONAL

    Source sequence(s)
    AK132404
    Consensus CDS
    CCDS25924.1
    UniProtKB/Swiss-Prot
    P47242
    UniProtKB/TrEMBL
    Q3V1K1
    Conserved Domains (2) summary
    cd00131
    Location:6131
    Blast Score: 640
    PAX; Paired Box domain
    pfam13551
    Location:26128
    Blast Score: 99
    HTH_29; Winged helix-turn helix

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000078.6 

    Range
    56691775..56712824
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006515581.1XP_006515644.1  

    See proteins identical to XP_006515644.1

    UniProtKB/Swiss-Prot
    P47242
    UniProtKB/TrEMBL
    Q3V1K1
    Related
    ENSMUSP00000117928, OTTMUSP00000026953, ENSMUST00000153250, OTTMUST00000056158
    Conserved Domains (2) summary
    cd00131
    Location:6131
    Blast Score: 640
    PAX; Paired Box domain
    pfam13551
    Location:26128
    Blast Score: 99
    HTH_29; Winged helix-turn helix
  2. XM_006515580.1XP_006515643.1  

    See proteins identical to XP_006515643.1

    UniProtKB/Swiss-Prot
    P47242
    UniProtKB/TrEMBL
    Q3V1K1
    Conserved Domains (2) summary
    cd00131
    Location:6131
    Blast Score: 640
    PAX; Paired Box domain
    pfam13551
    Location:26128
    Blast Score: 99
    HTH_29; Winged helix-turn helix
  3. XM_006515582.1XP_006515645.1  

    Conserved Domains (2) summary
    cd00131
    Location:6131
    Blast Score: 629
    PAX; Paired Box domain
    pfam13551
    Location:26128
    Blast Score: 95
    HTH_29; Winged helix-turn helix
  4. XM_006515579.1XP_006515642.1  

    See proteins identical to XP_006515642.1

    UniProtKB/Swiss-Prot
    P47242
    UniProtKB/TrEMBL
    Q3V1K1
    Conserved Domains (2) summary
    cd00131
    Location:6131
    Blast Score: 640
    PAX; Paired Box domain
    pfam13551
    Location:26128
    Blast Score: 99
    HTH_29; Winged helix-turn helix

Alternate Mm_Celera

Genomic

  1. AC_000034.1 

    Range
    57861482..57877076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)