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    Rab38 RAB38, member RAS oncogene family [ Rattus norvegicus (Norway rat) ]

    Gene ID: 252916, updated on 28-Jul-2015
    Official Symbol
    Rab38provided by RGD
    Official Full Name
    RAB38, member RAS oncogene familyprovided by RGD
    Primary source
    RGD:628752
    See related
    Ensembl:ENSRNOG00000016769
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Rattus
    Also known as
    R; Ruby
    Summary
    a small G protein that is involved in intracellular vesicle transport [RGD, Feb 2006]
    Orthologs
    See Rab38 in MapViewer
    Location:
    1q32
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    105 current Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (152072716..152153449)
    104 previous assembly Rnor_5.0 (GCF_000001895.4) 1 NC_005100.3 (158385888..158466621)

    Chromosome 1 - NC_005100.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC102554680 Neighboring gene cathepsin C Neighboring gene glyceraldehyde-3-phosphate dehydrogenase-like Neighboring gene similar to Phosphoglycerate kinase 1

    Related articles in PubMed

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    AP-1 adaptor complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    AP-1 adaptor complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    NOT AP-2 adaptor complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    AP-3 adaptor complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    AP-3 adaptor complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    BLOC-2 complex binding IEA
    Inferred from Electronic Annotation
    more info
     
    BLOC-2 complex binding ISO
    Inferred from Sequence Orthology
    more info
     
    GDP binding IC
    Inferred by Curator
    more info
    PubMed 
    GTP binding IDA
    Inferred from Direct Assay
    more info
    PubMed 
    GTP binding TAS
    Traceable Author Statement
    more info
    PubMed 
    GTP-dependent protein binding IEA
    Inferred from Electronic Annotation
    more info
     
    GTP-dependent protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    GTPase activity IC
    Inferred by Curator
    more info
    PubMed 
    GTPase activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    Rab protein signal transduction IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    endosome to melanosome transport IEA
    Inferred from Electronic Annotation
    more info
     
    endosome to melanosome transport ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular protein transport IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    melanosome assembly IEA
    Inferred from Electronic Annotation
    more info
     
    melanosome assembly ISO
    Inferred from Sequence Orthology
    more info
     
    melanosome organization IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    organelle organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    phagosome acidification IEA
    Inferred from Electronic Annotation
    more info
     
    phagosome acidification ISO
    Inferred from Sequence Orthology
    more info
     
    platelet dense granule organization IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    protein localization to membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    protein localization to membrane ISO
    Inferred from Sequence Orthology
    more info
     
    vesicle-mediated transport NAS
    Non-traceable Author Statement
    more info
    PubMed 
    Component Evidence Code Pubs
    colocalizes_with Golgi apparatus IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytoplasm IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cytosol IDA
    Inferred from Direct Assay
    more info
    PubMed 
    early endosome IEA
    Inferred from Electronic Annotation
    more info
     
    early endosome ISO
    Inferred from Sequence Orthology
    more info
     
    NOT early endosome lumen ISO
    Inferred from Sequence Orthology
    more info
     
    colocalizes_with endoplasmic reticulum IDA
    Inferred from Direct Assay
    more info
    PubMed 
    melanosome IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    melanosome ISO
    Inferred from Sequence Orthology
    more info
     
    membrane ISO
    Inferred from Sequence Orthology
    more info
     
    phagocytic vesicle IEA
    Inferred from Electronic Annotation
    more info
     
    phagocytic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    trans-Golgi network IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    vesicle IDA
    Inferred from Direct Assay
    more info
    PubMed 
    Preferred Names
    ras-related protein Rab-38
    Names
    Rab38, member of RAS oncogene family
    red eyed dilution
    ruby or red eyed dilution
    small GTP binding protein

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_145774.2NP_665717.1  ras-related protein Rab-38

      See identical proteins and their annotated locations for NP_665717.1

      Status: PROVISIONAL

      Source sequence(s)
      M94043
      UniProtKB/TrEMBL
      Q63483
      Related
      ENSRNOP00000022538, ENSRNOT00000022538
      Conserved Domains (2) summary
      cd04107
      Location:10208
      Rab32_Rab38; Rab GTPase families 18 (Rab18) and 32 (Rab32)
      pfam00071
      Location:11178
      Ras; Ras family

    RefSeqs of Annotated Genomes: Rattus norvegicus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Rnor_6.0 Primary Assembly

    Genomic

    1. NC_005100.4 Reference Rnor_6.0 Primary Assembly

      Range
      152072716..152153449
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Rn_Celera

    Genomic

    1. AC_000069.1 Alternate Rn_Celera

      Range
      140481941..140561948
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)