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TNFRSF11B tumor necrosis factor receptor superfamily, member 11b [ Homo sapiens (human) ]

Gene ID: 4982, updated on 15-Sep-2014
Official Symbol
TNFRSF11Bprovided by HGNC
Official Full Name
tumor necrosis factor receptor superfamily, member 11bprovided by HGNC
Primary source
HGNC:HGNC:11909
See related
Ensembl:ENSG00000164761; HPRD:04032; MIM:602643; Vega:OTTHUMG00000164969
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
OPG; TR1; OCIF
Summary
The protein encoded by this gene is a member of the TNF-receptor superfamily. This protein is an osteoblast-secreted decoy receptor that functions as a negative regulator of bone resorption. This protein specifically binds to its ligand, osteoprotegerin ligand, both of which are key extracellular regulators of osteoclast development. Studies of the mouse counterpart also suggest that this protein and its ligand play a role in lymph-node organogenesis and vascular calcification. Alternatively spliced transcript variants of this gene have been reported, but their full length nature has not been determined. [provided by RefSeq, Jul 2008]
See TNFRSF11B in Epigenomics, MapViewer
Location:
8q24
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCh38 (GCF_000001405.26) 8 NC_000008.11 (118923557..118952144, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 8 NC_000008.10 (119935796..119964383, complement)

Chromosome 8 - NC_000008.11Genomic Context describing neighboring genes Neighboring gene sterile alpha motif domain containing 12 Neighboring gene SAMD12 antisense RNA 1 Neighboring gene ribosomal protein S26 pseudogene 35 Neighboring gene GABA(A) receptor-associated protein-like 2 pseudogene Neighboring gene collectin sub-family member 10 (C-type lectin) Neighboring gene uncharacterized LOC101927513

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Associated conditions

Description Tests
Hyperphosphatasemia with bone disease
MedGen: C0268414 OMIM: 239000 GeneReviews: Not available
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NHGRI GWAS Catalog

Description
A genome-wide meta-analysis of six type 1 diabetes cohorts identifies multiple associated loci.
NHGRI GWA Catalog
An integration of genome-wide association study and gene expression profiling to prioritize the discovery of novel susceptibility Loci for osteoporosis-related traits.
NHGRI GWA Catalog
Bone mineral density, osteoporosis, and osteoporotic fractures: a genome-wide association study.
NHGRI GWA Catalog
Genetic determinants of trabecular and cortical volumetric bone mineral densities and bone microstructure.
NHGRI GWA Catalog
Genome-wide meta-analysis identifies 56 bone mineral density loci and reveals 14 loci associated with risk of fracture.
NHGRI GWA Catalog
Multiple genetic loci for bone mineral density and fractures.
NHGRI GWA Catalog
Multistage genome-wide association meta-analyses identified two new loci for bone mineral density.
NHGRI GWA Catalog
Twenty bone-mineral-density loci identified by large-scale meta-analysis of genome-wide association studies.
NHGRI GWA Catalog
Products Interactant Other Gene Complex Source Pubs Description

Markers

Homology

Clone Names

  • MGC29565

Gene Ontology Provided by GOA

Function Evidence Code Pubs
cytokine activity TAS
Traceable Author Statement
more info
PubMed 
receptor activity TAS
Traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
apoptotic process IEA
Inferred from Electronic Annotation
more info
 
extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 
negative regulation of bone resorption IEA
Inferred from Electronic Annotation
more info
 
negative regulation of odontogenesis of dentin-containing tooth IEA
Inferred from Electronic Annotation
more info
 
response to arsenic-containing substance IEA
Inferred from Electronic Annotation
more info
 
response to drug IEA
Inferred from Electronic Annotation
more info
 
response to estrogen IEA
Inferred from Electronic Annotation
more info
 
response to magnesium ion IEA
Inferred from Electronic Annotation
more info
 
response to nutrient IEA
Inferred from Electronic Annotation
more info
 
signal transduction IEA
Inferred from Electronic Annotation
more info
 
skeletal system development TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
extracellular region TAS
Traceable Author Statement
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
proteinaceous extracellular matrix IEA
Inferred from Electronic Annotation
more info
 
Preferred Names
tumor necrosis factor receptor superfamily member 11B
Names
tumor necrosis factor receptor superfamily member 11B
osteoprotegerin
osteoclastogenesis inhibitory factor

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_012202.1 

    Range
    5001..33588
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_002546.3NP_002537.3  tumor necrosis factor receptor superfamily member 11B precursor

    See proteins identical to NP_002537.3

    Status: REVIEWED

    Source sequence(s)
    AK223155, CK903484, DA477521
    Consensus CDS
    CCDS6326.1
    UniProtKB/Swiss-Prot
    O00300
    Related
    ENSP00000297350, OTTHUMP00000228056, ENST00000297350, OTTHUMT00000381220
    Conserved Domains (2) summary
    cd00185
    Location:28124
    TNFR; Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and ...
    cd01670
    Location:323353
    Death; Death Domain: a protein-protein interaction domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38 Primary Assembly

Genomic

  1. NC_000008.11 

    Range
    118923557..118952144
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate HuRef

Genomic

  1. AC_000140.1 

    Range
    115263331..115291874
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CHM1_1.1

Genomic

  1. NC_018919.2 

    Range
    119976820..120005398
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)