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    Syn1 synapsin I [ Mus musculus (house mouse) ]

    Gene ID: 20964, updated on 27-Jun-2015
    Official Symbol
    Syn1provided by MGI
    Official Full Name
    synapsin Iprovided by MGI
    Primary source
    MGI:MGI:98460
    See related
    Ensembl:ENSMUSG00000037217; Vega:OTTMUSG00000017181
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Syn-1; Syn1-S
    Orthologs
    See Syn1 in Epigenomics, MapViewer
    Location:
    X 16.37 cM; X A1-A4
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    105 current GRCm38.p3 (GCF_000001635.23) X NC_000086.7 (20860511..20920918, complement)
    Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) X NC_000086.6 (20437637..20498044, complement)

    Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 39500 Neighboring gene v-raf murine sarcoma 3611 viral oncogene homolog Neighboring gene ribonuclease UK114 pseudogene Neighboring gene microRNA 5617 Neighboring gene tissue inhibitor of metalloproteinase 1 Neighboring gene complement factor properdin Neighboring gene ELK1, member of ETS oncogene family

    GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

    Products Interactant Other Gene Complex Source Pubs Description

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    calcium-dependent protein binding ISO
    Inferred from Sequence Orthology
    more info
     
    protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    protein dimerization activity TAS
    Traceable Author Statement
    more info
    PubMed 
    Process Evidence Code Pubs
    neurotransmitter secretion IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    neurotransmitter secretion IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    Component Evidence Code Pubs
    axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    cell IGI
    Inferred from Genetic Interaction
    more info
    PubMed 
    cytosol ISO
    Inferred from Sequence Orthology
    more info
     
    dendrite ISO
    Inferred from Sequence Orthology
    more info
     
    intracellular organelle ISO
    Inferred from Sequence Orthology
    more info
     
    postsynaptic density IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynaptic active zone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    presynaptic active zone ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    synapse IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synapse ISO
    Inferred from Sequence Orthology
    more info
    PubMed 
    synaptic vesicle ISO
    Inferred from Sequence Orthology
    more info
     
    synaptic vesicle membrane IDA
    Inferred from Direct Assay
    more info
    PubMed 
    synaptonemal complex IDA
    Inferred from Direct Assay
    more info
    PubMed 
    terminal bouton ISO
    Inferred from Sequence Orthology
    more info
     
    Preferred Names
    synapsin-1
    Names
    synapsin-1
    truncated synapsin 1-S

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001110780.1NP_001104250.1  synapsin-1 isoform b

      See identical proteins and their annotated locations for NP_001104250.1

      Status: VALIDATED

      Source sequence(s)
      AF085809, BB646141, BC022954
      Consensus CDS
      CCDS53018.1
      UniProtKB/Swiss-Prot
      O88935
      Related
      ENSMUSP00000111002, OTTMUSP00000018688, ENSMUST00000115345, OTTMUST00000041608
      Conserved Domains (4) summary
      pfam02078
      Location:115212
      Synapsin; Synapsin, N-terminal domain
      pfam02750
      Location:214416
      Synapsin_C; Synapsin, ATP binding domain
      pfam10581
      Location:127
      Synapsin_N; Synapsin N-terminal
      cl22485
      Location:607670
      Flg_hook; Flagellar hook-length control protein FliK
    2. NM_013680.4NP_038708.3  synapsin-1 isoform a

      See identical proteins and their annotated locations for NP_038708.3

      Status: VALIDATED

      Source sequence(s)
      BB646141, BC022954, BI730087
      Consensus CDS
      CCDS53017.1
      UniProtKB/Swiss-Prot
      O88935
      Related
      ENSMUSP00000080568, ENSMUST00000081893
      Conserved Domains (4) summary
      pfam02078
      Location:115212
      Synapsin; Synapsin, N-terminal domain
      pfam02750
      Location:214416
      Synapsin_C; Synapsin, ATP binding domain
      pfam10581
      Location:127
      Synapsin_N; Synapsin N-terminal
      cl22485
      Location:607661
      Flg_hook; Flagellar hook-length control protein FliK

    RefSeqs of Annotated Genomes: Mus musculus Annotation Release 105

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm38.p3 C57BL/6J

    Genomic

    1. NC_000086.7 Reference GRCm38.p3 C57BL/6J

      Range
      20860511..20920918
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Mm_Celera

    Genomic

    1. AC_000042.1 Alternate Mm_Celera

      Range
      18991650..19054780
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)