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    PGTG_12168 DNA ligase 1 [ Puccinia graminis f. sp. tritici CRL 75-36-700-3 ]

    Gene ID: 10540222, updated on 28-Dec-2023

    Summary

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    Gene symbol
    PGTG_12168
    Gene description
    DNA ligase 1
    Locus tag
    PGTG_12168
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Puccinia graminis f. sp. tritici CRL 75-36-700-3 (strain: CRL 75-36-700-3, forma-specialis: tritici CRL 75-36-700-3)
    Lineage
    Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia
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    Genomic context

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    See PGTG_12168 in Genome Data Viewer
    Location:
    chromosome: Unknown
    Exon count:
    8

    NW_003526586.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NW_003526586.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables DNA ligase (ATP) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in DNA repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in lagging strand elongation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA ligase 1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NW_003526586.1 Reference assembly

      Range
      184603..187699 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003330583.2 → XP_003330631.2  DNA ligase 1 [Puccinia graminis f. sp. tritici CRL 75-36-700-3]

      See identical proteins and their annotated locations for XP_003330631.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B0RLD2, E3KPH7
      Conserved Domains (4) summary
      cd07969
      Location:614 → 759
      OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
      cd07900
      Location:389 → 609
      Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
      PLN03113
      Location:79 → 786
      PLN03113; DNA ligase 1; Provisional
      pfam04675
      Location:195 → 322
      DNA_ligase_A_N; DNA ligase N terminus
    Nucleotide Protein
    Heading Accession and Version

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