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Tenm1 teneurin transmembrane protein 1 [ Mus musculus (house mouse) ]

Gene ID: 23963, updated on 8-Dec-2014
Official Symbol
Tenm1provided by MGI
Official Full Name
teneurin transmembrane protein 1provided by MGI
Primary source
MGI:MGI:1345185
Locus tag
RP23-91L2.1
See related
Ensembl:ENSMUSG00000016150; Vega:OTTMUSG00000017325
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciurognathi; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Odz1; Odz2; ten-1; TCAP-1; Ten-m1
See Tenm1 in Epigenomics, MapViewer
Location:
X; X A2
Exon count:
36
Annotation release Status Assembly Chr Location
104 current GRCm38.p2 (GCF_000001635.22) X NC_000086.7 (42527866..43429164, complement)

Chromosome X - NC_000086.7Genomic Context describing neighboring genes Neighboring gene predicted gene 2483 Neighboring gene SH2 domain containing 1A Neighboring gene predicted gene 14578 Neighboring gene predicted gene 14579 Neighboring gene predicted gene 362

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein heterodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
protein homodimerization activity IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
extracellular region IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 
perinuclear region of cytoplasm IDA
Inferred from Direct Assay
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
Preferred Names
teneurin-1
Names
teneurin-1
tenascin-M1
protein Odd Oz/ten-m homolog 1

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_011855.4NP_035985.2  teneurin-1

    See proteins identical to NP_035985.2

    Status: VALIDATED

    Source sequence(s)
    AL831716, BC138860, BY729750
    Consensus CDS
    CCDS40953.1
    UniProtKB/TrEMBL
    A2ANM0
    UniProtKB/Swiss-Prot
    Q9WTS4
    Related
    ENSMUSP00000016294, ENSMUST00000016294
    Conserved Domains (7) summary
    TIGR01643
    Location:18511891
    YD_repeat_2x; YD repeat (two copies)
    COG3209
    Location:18242393
    RhsA; Rhs family protein [Cell envelope biogenesis, outer membrane]
    TIGR03696
    Location:23452423
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:622836
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam06484
    Location:23317
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:531557
    EGF_2; EGF-like domain
    pfam15636
    Location:26462724
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 104

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p2 C57BL/6J

Genomic

  1. NC_000086.7 

    Range
    42527866..43429164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006541491.1XP_006541554.1  

    Conserved Domains (7) summary
    TIGR01643
    Location:18501890
    YD_repeat_2x; YD repeat (two copies)
    COG3209
    Location:18232392
    RhsA; Rhs family protein [Cell envelope biogenesis, outer membrane]
    TIGR03696
    Location:23442422
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:621835
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam06484
    Location:23317
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:530556
    EGF_2; EGF-like domain
    pfam15636
    Location:26452723
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
  2. XM_006541492.1XP_006541555.1  

    UniProtKB/TrEMBL
    A2ANL9
    Related
    ENSMUSP00000110710, OTTMUSP00000021217, ENSMUST00000115058, OTTMUST00000046953
    Conserved Domains (7) summary
    TIGR01643
    Location:18441884
    YD_repeat_2x; YD repeat (two copies)
    COG3209
    Location:18172386
    RhsA; Rhs family protein [Cell envelope biogenesis, outer membrane]
    TIGR03696
    Location:23382416
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:622836
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam06484
    Location:23317
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:531557
    EGF_2; EGF-like domain
    pfam15636
    Location:26392717
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
  3. XM_006541490.1XP_006541553.1  

    See proteins identical to XP_006541553.1

    UniProtKB/TrEMBL
    A2ANM0
    UniProtKB/Swiss-Prot
    Q9WTS4
    Related
    ENSMUSP00000110711, OTTMUSP00000018946, ENSMUST00000115059, OTTMUST00000042144
    Conserved Domains (7) summary
    TIGR01643
    Location:18511891
    YD_repeat_2x; YD repeat (two copies)
    COG3209
    Location:18242393
    RhsA; Rhs family protein [Cell envelope biogenesis, outer membrane]
    TIGR03696
    Location:23452423
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:622836
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam06484
    Location:23317
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:531557
    EGF_2; EGF-like domain
    pfam15636
    Location:26462724
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin
  4. XM_006541489.1XP_006541552.1  

    See proteins identical to XP_006541552.1

    UniProtKB/TrEMBL
    A2ANM0
    UniProtKB/Swiss-Prot
    Q9WTS4
    Conserved Domains (7) summary
    TIGR01643
    Location:18511891
    YD_repeat_2x; YD repeat (two copies)
    COG3209
    Location:18242393
    RhsA; Rhs family protein [Cell envelope biogenesis, outer membrane]
    TIGR03696
    Location:23452423
    Rhs_assc_core; RHS repeat-associated core domain
    pfam01500
    Location:622836
    Keratin_B2; Keratin, high sulfur B2 protein
    pfam06484
    Location:23317
    Ten_N; Teneurin Intracellular Region
    pfam07974
    Location:531557
    EGF_2; EGF-like domain
    pfam15636
    Location:26462724
    Tox-GHH; GHH signature containing HNH/Endo VII superfamily nuclease toxin

Reference GRCm38.p2 129S6/SvEvTac

Genomic

  1. NT_039739.2 

    Range
    8606..390701
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Mm_Celera

Genomic

  1. AC_000042.1 

    Range
    30106289..30816175
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)