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OHFVgp1 polyprotein [ Omsk hemorrhagic fever virus ]

Gene ID: 2943111, updated on 22-Feb-2014
Gene symbol
OHFVgp1
Gene description
polyprotein
Locus tag
OHFVgp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Omsk hemorrhagic fever virus (strain: Bogoluvovska)
Lineage
Viruses; ssRNA positive-strand viruses, no DNA stage; Flaviviridae; Flavivirus; tick-borne encephalitis virus group
Sequence:
NC_005062.1 (133..10377)

NC_005062.1Genomic Context describing neighboring genes

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_005062.1 

    Range
    133..10377
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_878909.1 polyprotein [Omsk hemorrhagic fever virus]

    See proteins identical to NP_878909.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7T6D2
    Conserved Domains (17) summary
    pfam01002
    Location:13601489
    Blast Score: 392
    Flavi_NS2B; Flavivirus non-structural protein NS2B
    pfam01570
    Location:120205
    Blast Score: 345
    Flavi_propep; Flavivirus polyprotein propeptide
    pfam00948
    Location:7781132
    Blast Score: 1465
    Flavi_NS1; Flavivirus non-structural Protein NS1
    smart00490
    Location:18661955
    Blast Score: 113
    HELICc; helicase superfamily c-terminal domain
    pfam01350
    Location:21132257
    Blast Score: 567
    Flavi_NS4A; Flavivirus non-structural protein NS4A
    cd12149
    Location:591675
    Blast Score: 343
    Flavi_E_C; Immunoglobulin-like domain III (C-terminal domain) of Flavivirus envelope glycoprotein E
    TIGR04240
    Location:680776
    Blast Score: 403
    flavi_E_stem; flavivirus envelope glycoprotein E, stem/anchor domain
    smart00487
    Location:16841820
    Blast Score: 147
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:16841813
    Blast Score: 190
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    pfam00869
    Location:281581
    Blast Score: 1354
    Flavi_glycoprot; Flavivirus glycoprotein, central and dimerization domains
    pfam00949
    Location:15091659
    Blast Score: 570
    Peptidase_S7; Peptidase S7, Flavivirus NS3 serine protease
    pfam00972
    Location:27653408
    Blast Score: 3224
    Flavi_NS5; Flavivirus RNA-directed RNA polymerase
    pfam01003
    Location:4116
    Blast Score: 337
    Flavi_capsid; Flavivirus capsid protein C
    pfam01004
    Location:206280
    Blast Score: 308
    Flavi_M; Flavivirus envelope glycoprotein M
    pfam01005
    Location:11411355
    Blast Score: 613
    Flavi_NS2A; Flavivirus non-structural protein NS2A
    pfam01349
    Location:22602510
    Blast Score: 981
    Flavi_NS4B; Flavivirus non-structural protein NS4B
    pfam01728
    Location:25662733
    Blast Score: 206
    FtsJ; FtsJ-like methyltransferase