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HCoSV-D_gp1 polyprotein [ Human cosavirus D ]

Gene ID: 7986824, updated on 14-Feb-2015
Gene symbol
HCoSV-D_gp1
Gene description
polyprotein
Locus tag
HCoSV-D_gp1
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Human cosavirus D (strain: HCoSV-D1, isolate: 5004, nat-host: Homo sapiens)
Lineage
Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Cosavirus; unclassified Cosavirus
Sequence:
NC_012802.1 (748..7128)

NC_012802.1Genomic Context describing neighboring genes

Related articles in PubMed

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Names
polyprotein
VP4
VP2
VP3
VP1
2A
2B
3C
3A
3B
3C
3D

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_012802.1 Reference assembly

    Range
    748..7128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. YP_002956076.1 polyprotein [Human cosavirus D]

    See proteins identical to YP_002956076.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B8XTQ4
    Conserved Domains (6) summary
    cd00205
    Location:408566
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    pfam08935
    Location:267
    VP4_2; Viral protein VP4 subunit
    cd01699
    Location:18162072
    RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
    pfam00548
    Location:14621638
    Peptidase_C3; 3C cysteine protease (picornain 3C)
    pfam00910
    Location:11291230
    RNA_helicase; RNA helicase
    cl13999
    Location:701848
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
  2. YP_002956119.1 VP4

  3. YP_002956120.1 VP2

    Conserved Domains (1) summary
    cd00205
    Location:60265
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
  4. YP_002956121.1 VP3

    Conserved Domains (1) summary
    cd00205
    Location:70228
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
  5. YP_002956122.1 VP1

    Conserved Domains (1) summary
    cl13999
    Location:132279
    rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
  6. YP_002956123.1 2A

  7. YP_002956124.1 2B

  8. YP_002956125.1 3C

    Conserved Domains (1) summary
    pfam00910
    Location:116217
    RNA_helicase; RNA helicase
  9. YP_002956126.1 3A

  10. YP_002956127.1 3B

  11. YP_002956128.1 3C

    Conserved Domains (1) summary
    pfam00548
    Location:1177
    Peptidase_C3; 3C cysteine protease (picornain 3C)
  12. YP_002956129.1 3D

    Conserved Domains (1) summary
    cd01699
    Location:152408
    RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...