Display Settings:

Format

Send to:

Choose Destination
    • Showing Current items.

    DAHV-1_gp1 polyprotein [ Duck hepatitis A virus 1 ]

    Gene ID: 5076728, updated on 26-Jun-2015
    Gene symbol
    DAHV-1_gp1
    Gene description
    polyprotein
    Locus tag
    DAHV-1_gp1
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Duck hepatitis A virus 1 (strain: R85952; ATCC VR-191, gb-acronym: DHAV-1)
    Lineage
    Viruses; ssRNA positive-strand viruses, no DNA stage; Picornavirales; Picornaviridae; Avihepatovirus
    Sequence:
    NC_008250.2 (627..7376)

    NC_008250.2Genomic Context describing neighboring genes

    Names
    polyprotein
    P1 precursor polypeptide
    P2 precursor polypeptide
    P3 precursor polypeptide
    capsid protein VP0
    capsid protein VP3
    capsid protein VP1
    2A1 protein
    protein 2A2
    protein 2B
    protein 2C
    protein 3A
    genome linked protein VPg (protein 3B)
    picornain 3C
    RNA-directed RNA-polymerase 3D

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_008250.2 Reference assembly

      Range
      627..7376
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_007947990.1 polyprotein [Duck hepatitis A virus 1]

      See identical proteins and their annotated locations for YP_007947990.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      Q076B4
      Conserved Domains (5) summary
      cd00009
      Location:12851421
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      cd00205
      Location:80252
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
      cd01699
      Location:19342191
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...
      pfam00548
      Location:16491782
      Peptidase_C3; 3C cysteine protease (picornain 3C)
      cl21455
      Location:753918
      ABC_ATPase; ATP-binding cassette transporter nucleotide-binding domain
    2. YP_007969873.1 capsid protein VP0

      Conserved Domains (1) summary
      cd00205
      Location:80252
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    3. YP_007969874.1 capsid protein VP3

      Conserved Domains (1) summary
      cd00205
      Location:81229
      rhv_like; Picornavirus capsid protein domain_like. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids composed of 60 copies each of 4 virus encoded proteins; alignment includes picornaviridae, like poliovirus, hepatitis A ...
    4. YP_007969875.1 capsid protein VP1

    5. YP_007969876.1 2A1 protein

    6. YP_007969877.1 protein 2A2

      Conserved Domains (1) summary
      cl21455
      Location:2167
      ABC_ATPase; ATP-binding cassette transporter nucleotide-binding domain
    7. YP_007969878.1 protein 2B

    8. YP_007969879.1 protein 2C

      Conserved Domains (2) summary
      cd00009
      Location:130266
      AAA; The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, ...
      smart00382
      Location:143267
      AAA; ATPases associated with a variety of cellular activities
    9. YP_007969880.1 protein 3A

    10. YP_007969881.1 genome linked protein VPg (protein 3B)

    11. YP_007969882.1 picornain 3C

      Conserved Domains (1) summary
      pfam00548
      Location:34167
      Peptidase_C3; 3C cysteine protease (picornain 3C)
    12. YP_007969883.1 RNA-directed RNA-polymerase 3D

      Conserved Domains (1) summary
      cd01699
      Location:138395
      RNA_dep_RNAP; RNA_dep_RNAP: RNA-dependent RNA polymerase (RdRp) is an essential protein encoded in the genomes of all RNA containing viruses with no DNA stage. RdRp catalyzes synthesis of the RNA strand complementary to a given RNA template. RdRps of many viruses are ...