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yhjD putative transporter YhjD [ Escherichia coli str. K-12 substr. MG1655 ]

Gene ID: 948033, updated on 6-Oct-2023

Summary

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Gene symbol
yhjD
Gene description
putative transporter YhjD
Primary source
ASAP:ABE-0011505
Locus tag
b3522
See related
ECOCYC:EG12248
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
Lineage
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Also known as
ECK3507
Summary
A point mutation in yhjD confering an R134C substitution was isolated repeatedly as a suppressor of the lethal KDO null phenotype of a gutQ kdsD double mutant and shown to permit the deletion of msbA, suggesting the mutant can export toxic lipid IV-A accumulating in the KDO mutant (Mamat, 2007). yihY and yhjD are paralogs. [More information is available at EcoGene: EG12248]. YhjD is an inner membrane protein with six predicted transmembrane domains; the C-terminus is located in the cytoplasm . [More information is available at EcoCyc: EG12248].
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Genomic context

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Sequence:
NC_000913.3 (3673362..3674375)

NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative DNA-binding transcriptional regulator YhjB Neighboring gene putative DNA-binding transcriptional regulator YhjC Neighboring gene putative transporter YhjE Neighboring gene AsmA family protein YhjG

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_000913.3

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic interaction maps in Escherichia coli reveal functional crosstalk among cell envelope biogenesis pathways. Babu M, et al. PLoS Genet, 2011 Nov. PMID 22125496, Free PMC Article
  2. RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. Vijayakumar SR, et al. J Bacteriol, 2004 Dec. PMID 15576800, Free PMC Article
  3. Adaptation to famine: a family of stationary-phase genes revealed by microarray analysis. Tani TH, et al. Proc Natl Acad Sci U S A, 2002 Oct 15. PMID 12374860, Free PMC Article
  4. Combined, functional genomic-biochemical approach to intermediary metabolism: interaction of acivicin, a glutamine amidotransferase inhibitor, with Escherichia coli K-12. Smulski DR, et al. J Bacteriol, 2001 Jun. PMID 11344143, Free PMC Article
  5. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. Weber H, et al. J Bacteriol, 2005 Mar. PMID 15716429, Free PMC Article

See all (16) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by EcoCyc

Process Evidence Code Pubs
acts_upstream_of_or_within lipopolysaccharide transport IMP
Inferred from Mutant Phenotype
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane IDA
Inferred from Direct Assay
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
  
located_in plasma membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
putative transporter YhjD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_000913.3 Reference assembly

    Range
    3673362..3674375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NP_417979.1 putative transporter YhjD [Escherichia coli str. K-12 substr. MG1655]

    See identical proteins and their annotated locations for NP_417979.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A5B9ADH9
    Conserved Domains (1) summary
    TIGR00766
    Location:52 → 326
    TIGR00766; inner membrane protein YhjD
Nucleotide Protein
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