U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    STM0333 putative LysR family transcriptional regulator [ Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 ]

    Gene ID: 1251852, updated on 6-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    STM0333
    Gene description
    putative LysR family transcriptional regulator
    Locus tag
    STM0333
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 (strain: LT2, serovar: Typhimurium, sub-species: enterica, culture-collection: ATCC:700720, culture-collection: SGSC:1412, type-material: type strain of Salmonella enterica)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_003197.2 (376656..377629)

    NC_003197.2Genomic Context describing neighboring genes Neighboring gene putative 3-isopropylmalate isomerase Neighboring gene putative 3-isopropylmalate isomerase (dehydratase), subunit with LeuC Neighboring gene putative fumarylacetoacetate (FAA) hydrolase Neighboring gene putative hydrolase or acyltransferase Neighboring gene putative cytoplasmic protein Neighboring gene putative outer membrane protein Neighboring gene putative fimbriae; chaparone Neighboring gene putative fimbriae; usher

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003197.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. McClelland M, et al. Nature, 2001 Oct 25. PMID 11677609

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    regulatory

    • Loc: 376656-376661 regulatory_class = ribosome_binding_site

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative LysR family transcriptional regulator
    NP_459328.1
    • similar to E. coli putative transcriptional regulator LYSR-type (AAC74869.1); Blastp hit to AAC74869.1 (314 aa), 44% identity in aa 2 - 307

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003197.2 Reference assembly

      Range
      376656..377629
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_459328.1 putative LysR family transcriptional regulator [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]

      See identical proteins and their annotated locations for NP_459328.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A379V1H4, A0A5I0CVC7, A0A5V0VTK6, A0A5W1U9Q5, A0A5X8Y0V0, A0A5Y9Y4G5, A0A5Z3UG37, A0A628R8A9, A0A635L5T9, A0A710YVJ7, A0A723PP97, A0A738IGD2, A0A744ANV4, A0A765BYZ5, A0A765N8B9
      Conserved Domains (2) summary
      cd08479
      Location:108 → 304
      PBP2_CrgA_like_9; The C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator CrgA-like, contains the type 2 periplasmic binding fold
      pfam00126
      Location:21 → 79
      HTH_1; Bacterial regulatory helix-turn-helix protein, lysR family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases