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    AT5G59610 Chaperone DnaJ-domain superfamily protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 836080, updated on 7-Sep-2023

    Summary

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    Gene symbol
    AT5G59610
    Gene description
    Chaperone DnaJ-domain superfamily protein
    Primary source
    Araport:AT5G59610
    Locus tag
    AT5G59610
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DJC73; DNA J protein C73; MTH12.18; MTH12_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    5
    Sequence:
    Chromosome: 5; NC_003076.8 (24010900..24015129)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene UDP-glucosyl transferase 76E1 Neighboring gene UDP-glucosyl transferase 76E2 Neighboring gene Tetratricopeptide repeat (TPR)-like superfamily protein Neighboring gene ATP synthase Neighboring gene Interleukin-1 receptor-associated kinase 4 protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evolution of chloroplast J proteins. Chiu CC, et al. PLoS One, 2013. PMID 23894646, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    NM_001161316.1
    NM_001345360.1
    NM_001345362.1

    Gene Ontology Provided by TAIR

    Component Evidence Code Pubs
    located_in chloroplast IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in chloroplast ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    Chaperone DnaJ-domain superfamily protein
    NP_001154788.1
    • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 23649 Blast hits to 23644 proteins in 3244 species: Archae - 193; Bacteria - 9673; Metazoa - 3994; Fungi - 2050; Plants - 2390; Viruses - 23; Other Eukaryotes - 5326 (source: NCBI BLink).
    NP_001318838.1
    • Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: unfolded protein binding, heat shock protein binding; INVOLVED IN: protein folding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ (InterPro:IPR003095); BEST Arabidopsis thaliana protein match is: Molecular chaperone Hsp40/DnaJ family protein (TAIR:AT4G39960.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      24010900..24015129
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001345361.1 → NP_001330548.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB64, A0A654GCJ5, A0A7G2FNR2
      Conserved Domains (2) summary
      PRK14277
      Location:75 → 222
      PRK14277; chaperone protein DnaJ; Provisional
      pfam00226
      Location:73 → 133
      DnaJ; DnaJ domain

    2. NM_125353.3 → NP_200769.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200769.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FNL5, Q9FNA0
      Conserved Domains (2) summary
      COG0484
      Location:75 → 242
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:73 → 133
      DnaJ; DnaJ domain

    3. NM_001345360.1 → NP_001318838.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FNL5, Q9FNA0
      Conserved Domains (2) summary
      COG0484
      Location:75 → 242
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:73 → 133
      DnaJ; DnaJ domain

    4. NM_001345362.1 → NP_001330549.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8BB64, A0A654GCJ5, A0A7G2FNR2
      Conserved Domains (2) summary
      PRK14277
      Location:75 → 222
      PRK14277; chaperone protein DnaJ; Provisional
      pfam00226
      Location:73 → 133
      DnaJ; DnaJ domain

    5. NM_001161316.1 → NP_001154788.1  Chaperone DnaJ-domain superfamily protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001154788.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4KJ86
      Conserved Domains (2) summary
      COG0484
      Location:75 → 133
      DnaJ; DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
      pfam00226
      Location:73 → 133
      DnaJ; DnaJ domain
    Nucleotide Protein
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