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    TRM8 GPI-anchored adhesin-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 832749, updated on 7-Sep-2023

    Summary

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    Gene symbol
    TRM8
    Gene description
    GPI-anchored adhesin-like protein
    Primary source
    Araport:AT5G26910
    Locus tag
    AT5G26910
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    F2P16.18; F2P16_18; TON1 Recruiting Motif 8
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    6
    Sequence:
    Chromosome: 5; NC_003076.8 (9465849..9470403, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene miscRNA Neighboring gene Transducin family protein / WD-40 repeat family protein Neighboring gene Cam-binding protein 60-like G Neighboring gene GATA transcription factor 23

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The preprophase band of microtubules controls the robustness of division orientation in plants. Schaefer E, et al. Science, 2017 Apr 14. PMID 28408602
    2. Experimental analysis of the Arabidopsis mitochondrial proteome highlights signaling and regulatory components, provides assessment of targeting prediction programs, and indicates plant-specific mitochondrial proteins. Heazlewood JL, et al. Plant Cell, 2004 Jan. PMID 14671022, Free PMC Article
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001036872.1
    NM_001203478.1
    NM_001343986.1
    NM_122573.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within establishment of mitotic spindle orientation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within preprophase band assembly IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrion HDA PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    GPI-anchored adhesin-like protein
    NP_001031949.1
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 990 Blast hits to 447 proteins in 125 species: Archae - 0; Bacteria - 525; Metazoa - 80; Fungi - 59; Plants - 91; Viruses - 0; Other Eukaryotes - 235 (source: NCBI BLink).
    NP_001190407.1
    • unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1).
    NP_198043.2
    • unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G58650.1); Has 1322 Blast hits to 684 proteins in 162 species: Archae - 4; Bacteria - 497; Metazoa - 157; Fungi - 101; Plants - 155; Viruses - 0; Other Eukaryotes - 408 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      9465849..9470403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_122573.4 → NP_198043.2  GPI-anchored adhesin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_198043.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJN1, A0A384LKQ3, A0A7G2FBI4, Q6NQ74
      Conserved Domains (2) summary
      pfam14309
      Location:673 → 820
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:76 → 102
      VARLMGL; DUF761-associated sequence motif

    2. NM_001343986.1 → NP_001330135.1  GPI-anchored adhesin-like protein [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178UJN1, A0A384LKQ3, A0A7G2FBI4, Q6NQ74
      Conserved Domains (2) summary
      pfam14309
      Location:673 → 820
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:76 → 102
      VARLMGL; DUF761-associated sequence motif

    3. NM_001036872.1 → NP_001031949.1  GPI-anchored adhesin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001031949.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      F4K2R4
      Conserved Domains (1) summary
      pfam14383
      Location:76 → 102
      VARLMGL; DUF761-associated sequence motif

    4. NM_001203478.1 → NP_001190407.1  GPI-anchored adhesin-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_001190407.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A7G2FBI4, F4K2R2
      Conserved Domains (2) summary
      pfam14309
      Location:672 → 819
      DUF4378; Domain of unknown function (DUF4378)
      pfam14383
      Location:75 → 101
      VARLMGL; DUF761-associated sequence motif
    Nucleotide Protein
    Heading Accession and Version

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