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    AT1G16020 vacuolar fusion protein (DUF1712) [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838172, updated on 6-Oct-2023

    Summary

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    Gene symbol
    AT1G16020
    Gene description
    vacuolar fusion protein (DUF1712)
    Primary source
    Araport:AT1G16020
    Locus tag
    AT1G16020
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    CALCIUM CAFFEINE ZINC SENSITIVITY 1a; CCZ1a; T24D18.12; T24D18_12
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    10
    Sequence:
    Chromosome: 1; NC_003070.9 (5498012..5501358)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene GAG1At protein Neighboring gene magnesium transporter 2 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene heat shock protein 70B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Activation of the Rab7 GTPase by the MON1-CCZ1 Complex Is Essential for PVC-to-Vacuole Trafficking and Plant Growth in Arabidopsis. Cui Y, et al. Plant Cell, 2014 May. PMID 24824487, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001332198.1
    NM_001332199.1
    NM_101470.3
    NM_179343.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in vesicle-mediated transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of Mon1-Ccz1 complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in mitochondrion ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    vacuolar fusion protein (DUF1712)
    NP_563989.1
    • Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 187 Blast hits to 185 proteins in 74 species: Archae - 0; Bacteria - 0; Metazoa - 125; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
    NP_849674.1
    • Protein of unknown function (DUF1712); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1712, fungi (InterPro:IPR013176); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1712) (TAIR:AT1G80910.1); Has 188 Blast hits to 186 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 3; Plants - 43; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      5498012..5501358
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101470.3 → NP_563989.1  vacuolar fusion protein (DUF1712) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_563989.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      F4I2S4, Q8L8Y5, Q9S9N3
      UniProtKB/TrEMBL
      A0A7G2DQZ5
      Conserved Domains (1) summary
      pfam08217
      Location:13 → 512
      DUF1712; Fungal domain of unknown function (DUF1712)

    2. NM_179343.2 → NP_849674.1  vacuolar fusion protein (DUF1712) [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_849674.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A178W723, A0A5S9UMU9, A0A7G2DV16
      Conserved Domains (1) summary
      pfam08217
      Location:13 → 499
      DUF1712; Fungal domain of unknown function (DUF1712)

    3. NM_001332198.1 → NP_001322546.1  vacuolar fusion protein (DUF1712) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      Q0WTH0

    4. NM_001332199.1 → NP_001322545.1  vacuolar fusion protein (DUF1712) [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A1P8AUE1
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    F4I2S4.1

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