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    SCI1 splicing regulatory glutamine/lysine-rich-like protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 844261, updated on 6-Oct-2023

    Summary

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    Gene symbol
    SCI1
    Gene description
    splicing regulatory glutamine/lysine-rich-like protein
    Primary source
    Araport:AT1G79200
    Locus tag
    AT1G79200
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    stigma/style cell-cycle inhibitor 1; YUP8H12R.41; YUP8H12R_41
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    4
    Sequence:
    Chromosome: 1; NC_003070.9 (29794373..29796114)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb domain protein 63 Neighboring gene ARM repeat superfamily protein Neighboring gene N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene mercaptopyruvate sulfurtransferase 1 Neighboring gene tRNA-Arg

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. SCI1 is a component of the auxin-dependent control of cell proliferation in Arabidopsis upper pistil. DePaoli HC, et al. Plant Sci, 2014 Dec. PMID 25443839
    2. SCI1, the first member of the tissue-specific inhibitors of CDK (TIC) class, is probably connected to the auxin signaling pathway. DePaoli HC, et al. Plant Signal Behav, 2012 Jan. PMID 22301969, Free PMC Article
    3. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_106571.5

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within cellular response to auxin stimulus IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    acts_upstream_of_or_within gynoecium development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in negative regulation of cell division ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in regulation of auxin mediated signaling pathway IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in stigma development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in stigma development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    involved_in style development IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in style development ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    splicing regulatory glutamine/lysine-rich-like protein
    NP_565201.1
    • unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      29794373..29796114
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_106571.5 → NP_565201.1  splicing regulatory glutamine/lysine-rich-like protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_565201.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O64533, Q8GWY0, Q8LCI9
      UniProtKB/TrEMBL
      A0A178WDT9, A0A5S9WVP7
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8GWY0.1

    Gene LinkOut

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