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    AT1G21160 eukaryotic translation initiation factor 2 (eIF-2) family protein [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 838712, updated on 15-Feb-2024

    Summary

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    Gene symbol
    AT1G21160
    Gene description
    eukaryotic translation initiation factor 2 (eIF-2) family protein
    Primary source
    Araport:AT1G21160
    Locus tag
    AT1G21160
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    T22I11.2; T22I11_2
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    13
    Sequence:
    Chromosome: 1; NC_003070.9 (7407931..7413295, complement)

    Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene Vacuolar iron transporter (VIT) family protein Neighboring gene Mitochondrial transcription termination factor family protein Neighboring gene Exocyst complex component SEC5 Neighboring gene Small nuclear ribonucleoprotein family protein Neighboring gene sequence-specific DNA binding transcription factor Neighboring gene ncRNA Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003070.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A Pan-plant Protein Complex Map Reveals Deep Conservation and Novel Assemblies. McWhite CD, et al. Cell, 2020 Apr 16. PMID 32191846, Free PMC Article
    2. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    NM_101970.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    eukaryotic translation initiation factor 2 (eIF-2) family protein
    NP_173540.2
    • eukaryotic translation initiation factor 2 (eIF-2) family protein; FUNCTIONS IN: GTP binding, GTPase activity, translation initiation factor activity; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small GTP-binding protein (InterPro:IPR005225), Translation elongation factor EFTu/EF1A, domain 2 (InterPro:IPR004161), Translation initiation factor 2 related (InterPro:IPR015760), Protein synthesis factor, GTP-binding (InterPro:IPR000795), Translation elongation/initiation factor/Ribosomal, beta-barrel (InterPro:IPR009000); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 2 (eIF-2) family protein (TAIR:AT1G76810.1); Has 90488 Blast hits to 74140 proteins in 3758 species: Archae - 1026; Bacteria - 37280; Metazoa - 18910; Fungi - 5896; Plants - 2823; Viruses - 221; Other Eukaryotes - 24332 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003070.9 Reference assembly

      Range
      7407931..7413295 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_101970.4 → NP_173540.2  eukaryotic translation initiation factor 2 (eIF-2) family protein [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_173540.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A5S9VDF9, C0SUW8
      Conserved Domains (5) summary
      cd01887
      Location:498 → 708
      IF2_eIF5B; Initiation Factor 2 (IF2)/ eukaryotic Initiation Factor 5B (eIF5B) family
      PRK04004
      Location:492 → 1092
      PRK04004; translation initiation factor IF-2; Validated
      pfam11987
      Location:832 → 935
      IF-2; Translation-initiation factor 2
      cd03703
      Location:719 → 829
      aeIF5B_II; Domain II of archaeal and eukaryotic Initiation Factor 5
      cl02787
      Location:958 → 1058
      Translation_Factor_II_like; Domain II of Elongation factor Tu (EF-Tu)-like proteins
    Nucleotide Protein
    Heading Accession and Version

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