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    XTH12 xyloglucan endotransglucosylase/hydrolase 12 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 835857, updated on 7-Sep-2023

    Summary

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    Gene symbol
    XTH12
    Gene description
    xyloglucan endotransglucosylase/hydrolase 12
    Primary source
    Araport:AT5G57530
    Locus tag
    AT5G57530
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    AtXTH12; MUA2.10; MUA2_10; xyloglucan endotransglucosylase/hydrolase 12
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    Genomic context

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    See XTH12 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (23300321..23301689, complement)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene cotton fiber protein Neighboring gene zinc finger protein 2 Neighboring gene uncharacterized protein Neighboring gene xyloglucan endotransglucosylase/hydrolase 13

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Differences in enzymic properties of five recombinant xyloglucan endotransglucosylase/hydrolase (XTH) proteins of Arabidopsis thaliana. Maris A, et al. J Exp Bot, 2011 Jan. PMID 20732879
    2. High-throughput protein localization in Arabidopsis using Agrobacterium-mediated transient expression of GFP-ORF fusions. Koroleva OA, et al. Plant J, 2005 Jan. PMID 15610358
    3. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    NM_125134.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables polysaccharide binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    NOT enables xyloglucan-specific endo-beta-1,4-glucanase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables xyloglucan:xyloglucosyl transferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell wall biogenesis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within xyloglucan metabolic process IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm HDA PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plant-type cell wall HDA PubMed 

    General protein information

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    Preferred Names
    xyloglucan endotransglucosylase/hydrolase 12
    NP_200561.1
    • xyloglucan endotransglucosylase/hydrolase 12 (XTH12); CONTAINS InterPro DOMAIN/s: Xyloglucan endotransglucosylase/hydrolase (InterPro:IPR016455), Xyloglucan endo-transglycosylase, C-terminal (InterPro:IPR010713), Concanavalin A-like lectin/glucanase, subgroup (InterPro:IPR013320), Concanavalin A-like lectin/glucanase (InterPro:IPR008985), Glycoside hydrolase, family 16 (InterPro:IPR000757), Glycoside hydrolase, family 16, active site (InterPro:IPR008263); BEST Arabidopsis thaliana protein match is: xyloglucan endotransglucosylase/hydrolase 13 (TAIR:AT5G57540.1); Has 2233 Blast hits to 2211 proteins in 307 species: Archae - 0; Bacteria - 290; Metazoa - 0; Fungi - 455; Plants - 1386; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      23300321..23301689 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_125134.2 → NP_200561.1  xyloglucan endotransglucosylase/hydrolase 12 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_200561.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q9FKL9
      UniProtKB/TrEMBL
      A0A178UMJ6, A0A5S9YFJ7
      Conserved Domains (1) summary
      cd02176
      Location:23 → 282
      GH16_XET; Xyloglucan endotransglycosylase, member of glycosyl hydrolase family 16
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FKL9.1

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