U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    HDG4 homeodomain GLABROUS 4 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 827492, updated on 15-Oct-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    HDG4
    Gene description
    homeodomain GLABROUS 4
    Primary source
    Araport:AT4G17710
    Locus tag
    AT4G17710
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    DL4890C; FCAALL.102; homeodomain GLABROUS 4
    Summary
    Encodes a homeobox-leucine zipper family protein belonging to the HD-ZIP IV family.
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See HDG4 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    10
    Sequence:
    Chromosome: 4; NC_003075.7 (9856255..9859288, complement)

    Chromosome 4 - NC_003075.7Genomic Context describing neighboring genes Neighboring gene Homeodomain-like superfamily protein Neighboring gene uncharacterized protein Neighboring gene Putative membrane lipoprotein Neighboring gene Defensin-like (DEFL) family protein

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_003075.7

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes. Riechmann JL, et al. Science, 2000 Dec 15. PMID 11118137
    2. Evidence for network evolution in an Arabidopsis interactome map. Arabidopsis Interactome Mapping Consortium. Science, 2011 Jul 29. PMID 21798944, Free PMC Article
    3. Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana. Mayer K, et al. Nature, 1999 Dec 16. PMID 10617198

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    NM_117880.3

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables lipid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    homeodomain GLABROUS 4
    NP_193506.2
    • homeodomain GLABROUS 4 (HDG4); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Homeobox, conserved site (InterPro:IPR017970), Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), Lipid-binding START (InterPro:IPR002913), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: homeobox-7 (TAIR:AT5G46880.1); Has 10210 Blast hits to 10152 proteins in 479 species: Archae - 0; Bacteria - 4; Metazoa - 7535; Fungi - 255; Plants - 2198; Viruses - 0; Other Eukaryotes - 218 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003075.7 Reference assembly

      Range
      9856255..9859288 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_117880.3 → NP_193506.2  homeodomain GLABROUS 4 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_193506.2

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      O23611, Q8L7H4
      UniProtKB/TrEMBL
      A0A178UX05, A0A5S9XU38
      Conserved Domains (4) summary
      cd08875
      Location:233 → 462
      START_ArGLABRA2_like; C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins
      pfam00046
      Location:91 → 144
      Homeobox; Homeobox domain
      pfam12824
      Location:24 → 147
      MRP-L20; Mitochondrial ribosomal protein subunit L20
      cl19252
      Location:105 → 197
      MreC; rod shape-determining protein MreC
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q8L7H4.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Tools