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    RALFL26 ralf-like 26 [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 822109, updated on 15-Feb-2024

    Summary

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    Gene symbol
    RALFL26
    Gene description
    ralf-like 26
    Primary source
    Araport:AT3G25170
    Locus tag
    AT3G25170
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MJL12.13; ralf-like 26
    Summary
    Member of a diversely expressed predicted peptide family showing sequence similarity to tobacco Rapid Alkalinization Factor (RALF), and is believed to play an essential role in the physiology of Arabidopsis. Consists of a single exon and is characterized by a conserved C-terminal motif and N-terminal signal peptide.
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    2
    Sequence:
    Chromosome: 3; NC_003074.8 (9165667..9166820, complement)

    Chromosome 3 - NC_003074.8Genomic Context describing neighboring genes Neighboring gene ralf-like 25 Neighboring gene miscRNA Neighboring gene ncRNA Neighboring gene cytochrome P450, family 82, subfamily G, polypeptide 1 Neighboring gene miscRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003074.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Peptomics, identification of novel cationic Arabidopsis peptides with conserved sequence motifs. Olsen AN, et al. In Silico Biol, 2002. PMID 12611624
    2. Sequence and analysis of chromosome 3 of the plant Arabidopsis thaliana. Salanoubat M, et al. Nature, 2000 Dec 14. PMID 11130713
    3. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_001338742.1
    NM_001338743.1
    NM_113422.4

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables hormone activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Process Evidence Code Pubs
    involved_in calcium-mediated signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within cell-cell signaling ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in apoplast ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    located_in extracellular region ISM
    Inferred from Sequence Model
    more info
    		  

    General protein information

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    Preferred Names
    ralf-like 26
    NP_566761.1
    • ralf-like 26 (RALFL26); CONTAINS InterPro DOMAIN/s: Rapid ALkalinization Factor (InterPro:IPR008801); BEST Arabidopsis thaliana protein match is: RALF-like 30 (TAIR:AT4G13075.1); Has 49 Blast hits to 49 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003074.8 Reference assembly

      Range
      9165667..9166820 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_113422.4 → NP_566761.1  ralf-like 26 [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_566761.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTT5, Q0V822, Q8L9C9
      UniProtKB/TrEMBL
      A0A178VBE0, A0A5S9XFK0, A0A654FBG2
      Conserved Domains (1) summary
      pfam05498
      Location:8 → 74
      RALF; Rapid ALkalinization Factor (RALF)

    2. NM_001338742.1 → NP_001327923.1  ralf-like 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTT5, Q0V822, Q8L9C9
      UniProtKB/TrEMBL
      A0A178VBE0, A0A5S9XFK0, A0A654FBG2
      Conserved Domains (1) summary
      pfam05498
      Location:8 → 74
      RALF; Rapid ALkalinization Factor (RALF)

    3. NM_001338743.1 → NP_001327922.1  ralf-like 26 [Arabidopsis thaliana]

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      A0A1I9LTT5, Q0V822, Q8L9C9
      UniProtKB/TrEMBL
      A0A178VBE0, A0A5S9XFK0, A0A654FBG2
      Conserved Domains (1) summary
      pfam05498
      Location:8 → 74
      RALF; Rapid ALkalinization Factor (RALF)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0V822.1

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