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    adat2 adenosine deaminase, tRNA-specific 2 [ Xenopus tropicalis (tropical clawed frog) ]

    Gene ID: 780017, updated on 5-Mar-2024

    Summary

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    Official Symbol
    adat2provided by Xenbase
    Official Full Name
    adenosine deaminase, tRNA-specific 2provided by Xenbase
    Primary source
    Xenbase:XB-GENE-963029
    See related
    Ensembl:ENSXETG00000009790
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus tropicalis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
    Also known as
    deadc1
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCB_Xtro_10.0 (GCF_000004195.4) 5 NC_030681.2 (64731762..64745960)
    103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 5 NC_030681.1 (67484597..67498751)

    Chromosome 5 - NC_030681.2Genomic Context describing neighboring genes Neighboring gene alpha-L-fucosidase 2 Neighboring gene peroxisomal biogenesis factor 3 Neighboring gene androgen-induced 1 Neighboring gene human immunodeficiency virus type I enhancer binding protein 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC147564

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables catalytic activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA-specific adenosine deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables tRNA-specific adenosine-34 deaminase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables tRNA-specific adenosine-34 deaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA wobble adenosine to inosine editing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within tRNA wobble adenosine to inosine editing IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    tRNA-specific adenosine deaminase 2
    Names
    adenosine deaminase, tRNA-specific 2, TAD2 homolog
    deaminase domain containing 1
    deaminase domain-containing protein 1
    tRNA-specific adenosine-34 deaminase subunit ADAT2
    NP_001072562.1
    XP_031757664.1
    XP_031757665.1
    XP_031757666.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001079094.1 → NP_001072562.1  tRNA-specific adenosine deaminase 2

      See identical proteins and their annotated locations for NP_001072562.1

      Status: PROVISIONAL

      Source sequence(s)
      BC122084
      UniProtKB/Swiss-Prot
      Q0P4H0
      UniProtKB/TrEMBL
      A0A803K1L1
      Related
      ENSXETP00000114203.1, ENSXETT00000106133.1
      Conserved Domains (1) summary
      COG0590
      Location:1 → 156
      TadA; tRNA(Arg) A34 adenosine deaminase TadA [Translation, ribosomal structure and biogenesis]

    RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCB_Xtro_10.0 Primary Assembly

    Genomic

    1. NC_030681.2 Reference UCB_Xtro_10.0 Primary Assembly

      Range
      64731762..64745960
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_031901804.1 → XP_031757664.1  tRNA-specific adenosine deaminase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8J1JKX1
      Conserved Domains (1) summary
      cd01285
      Location:14 → 104
      nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...

    2. XM_031901806.1 → XP_031757666.1  tRNA-specific adenosine deaminase 2 isoform X2

      UniProtKB/TrEMBL
      A0A8J1JM21
      Conserved Domains (1) summary
      cd01285
      Location:4 → 69
      nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...

    3. XM_031901805.1 → XP_031757665.1  tRNA-specific adenosine deaminase 2 isoform X1

      UniProtKB/TrEMBL
      A0A8J1JKX1
      Conserved Domains (1) summary
      cd01285
      Location:14 → 104
      nucleoside_deaminase; Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a ...
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q0P4H0.1 GenPept UniProtKB/Swiss-Prot:Q0P4H0

    Gene LinkOut

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