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    LOC4817178 AP-2 complex subunit alpha [ Drosophila pseudoobscura ]

    Gene ID: 4817178, updated on 14-Dec-2023

    Summary

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    Gene symbol
    LOC4817178
    Gene description
    AP-2 complex subunit alpha
    See related
    EnsemblRapid:LOC4817178
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Drosophila pseudoobscura
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    104 current UCI_Dpse_MV25 (GCF_009870125.1) 4 NC_046681.1 (19046573..19052087)

    Chromosome 4 - NC_046681.1Genomic Context describing neighboring genes Neighboring gene 60S acidic ribosomal protein P1 Neighboring gene ribonuclease H2 subunit A Neighboring gene F-box-like/WD repeat-containing protein ebi Neighboring gene DNA-directed RNA polymerase I subunit RPA2 Neighboring gene uncharacterized LOC117184069 Neighboring gene SUMO-conjugating enzyme UBC9-B

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_046681.1 Chromosome 4 Reference UCI_Dpse_MV25 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Evaluation of different reference based annotation strategies using RNA-Seq - a case study in Drososphila pseudoobscura. Palmieri N, et al. PLoS One, 2012. PMID 23056304, Free PMC Article
    2. Evolution of genes and genomes on the Drosophila phylogeny. Drosophila 12 Genomes Consortium, et al. Nature, 2007 Nov 8. PMID 17994087

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables clathrin adaptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in clathrin-dependent endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in intracellular protein transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of AP-2 adaptor complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of membrane coat IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    AP-2 complex subunit alpha
    Names
    alpha-Adaptin

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Drosophila pseudoobscura Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference UCI_Dpse_MV25 Primary Assembly

    Genomic

    1. NC_046681.1 Reference UCI_Dpse_MV25 Primary Assembly

      Range
      19046573..19052087
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001356405.4 → XP_001356441.1  AP-2 complex subunit alpha

      See identical proteins and their annotated locations for XP_001356441.1

      UniProtKB/Swiss-Prot
      Q29N38
      Related
      XP_001356441.1, XM_001356405.4
      Conserved Domains (3) summary
      smart00809
      Location:717 → 826
      Alpha_adaptinC2; Adaptin C-terminal domain
      pfam01602
      Location:28 → 586
      Adaptin_N; Adaptin N terminal region
      pfam02296
      Location:826 → 934
      Alpha_adaptin_C; Alpha adaptin AP2, C-terminal domain
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q29N38.1 GenPept UniProtKB/Swiss-Prot:Q29N38

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    Molecular Biology Databases