U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    LOC4346619 serine/threonine-protein phosphatase PP-X isozyme 2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4346619, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4346619
    Gene description
    serine/threonine-protein phosphatase PP-X isozyme 2
    Locus tag
    OSNPB_090284200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1190_B07.8
    Expression
    Ubiquitous expression in mature seeds (RPKM 20.8), flower buds (RPKM 18.5) and 6 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: 9
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (6233874..6238922)

    Chromosome 9 - NC_029264.1Genomic Context describing neighboring genes Neighboring gene probable E3 ubiquitin-protein ligase ARI9 Neighboring gene uncharacterized LOC9266502 Neighboring gene uncharacterized LOC4346620 Neighboring gene grpE protein homolog 2, mitochondrial

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029264.1 Chromosome 9 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in double-strand break repair via homologous recombination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in peptidyl-serine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    serine/threonine-protein phosphatase PP-X isozyme 2
    Names
    OSJNBa0009H03.25
    Os09g0284200
    putative protein phosphatase

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029264.1 Reference IRGSP-1.0 Primary Assembly

      Range
      6233874..6238922
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015757143.2 → XP_015612629.1  serine/threonine-protein phosphatase PP-X isozyme 2 isoform X2

      Conserved Domains (1) summary
      cl13995
      Location:5 → 151
      MPP_superfamily; metallophosphatase superfamily, metallophosphatase domain

    2. XM_015757142.2 → XP_015612628.1  serine/threonine-protein phosphatase PP-X isozyme 2 isoform X1

      UniProtKB/TrEMBL
      B8BDS5, B9G2K8, Q6EPR6, Q6ERK6
      Conserved Domains (1) summary
      cd07415
      Location:5 → 290
      MPP_PP2A_PP4_PP6; PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials