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    LOC4342793 THO complex subunit 4D [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342793, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4342793
    Gene description
    THO complex subunit 4D
    Locus tag
    OSNPB_070237100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 10.9), leaves before flowering (RPKM 9.1) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (7627360..7635965, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene dof zinc finger protein DOF5.1 Neighboring gene vacuolar protein sorting-associated protein 2 homolog 1 Neighboring gene uncharacterized LOC4342797 Neighboring gene uncharacterized LOC4342799

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables mRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mRNA export from nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    THO complex subunit 4A; THO complex subunit 4D
    Names
    Os07g0237100
    Os07g0237133
    P0565A07.101
    putative RNA and export factor binding protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      7627360..7635965 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026773.1 → XP_025882558.1  THO complex subunit 4D isoform X1

      UniProtKB/TrEMBL
      Q7XHQ6
      Conserved Domains (2) summary
      cd12680
      Location:93 → 167
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins
      pfam13865
      Location:248 → 318
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1

    2. XM_026026774.1 → XP_025882559.1  THO complex subunit 4A isoform X2

      Conserved Domains (1) summary
      cd12680
      Location:93 → 167
      RRM_THOC4; RNA recognition motif in THO complex subunit 4 (THOC4) and similar proteins

    3. XM_015791513.2 → XP_015646999.1  THO complex subunit 4A isoform X3

      UniProtKB/TrEMBL
      Q7XHQ6
      Conserved Domains (3) summary
      COG0724
      Location:88 → 217
      RRM; RNA recognition motif (RRM) domain [Translation, ribosomal structure and biogenesis]
      pfam13865
      Location:198 → 269
      FoP_duplication; C-terminal duplication domain of Friend of PRMT1
      cl17169
      Location:93 → 167
      RRM_SF; RNA recognition motif (RRM) superfamily
    Nucleotide Protein
    Heading Accession and Version

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