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    LOC4325028 CMP-sialic acid transporter 3-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4325028, updated on 3-Apr-2024

    Summary

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    Gene symbol
    LOC4325028
    Gene description
    CMP-sialic acid transporter 3-like
    Locus tag
    OSNPB_010898900
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    CSTLP3
    Expression
    Ubiquitous expression in flowers (RPKM 12.1), milk grains (RPKM 9.9) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39085075..39090930)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4325112 Neighboring gene uncharacterized LOC4325113 Neighboring gene PTI1-like tyrosine-protein kinase 1 Neighboring gene papaya proteinase 4

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pyrimidine nucleotide-sugar transmembrane transporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in pyrimidine nucleotide-sugar transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    CMP-sialic acid transporter 3
    Names
    CMP-SA-Tr 3
    CMP-Sia-Tr 3
    CMP-sialic acid transporter-like protein 3
    LOC_Os01g67330
    P0506A10.22
    PLRR-4 polymorphic leucine-rich repeat protein-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428173.1 → NP_001415102.1  CMP-sialic acid transporter 3

      Status: VALIDATED

      Source sequence(s)
      AK120093, AP014957
      UniProtKB/Swiss-Prot
      A0A0P0VBM7, B8A7Q8, Q5N855

    2. NM_001428174.1 → NP_001415103.1  CMP-sialic acid transporter 3

      Status: VALIDATED

      Source sequence(s)
      AK120093, AP014957, CI116641
      UniProtKB/Swiss-Prot
      A0A0P0VBM7, B8A7Q8, Q5N855

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      39085075..39090930
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765987.2 → XP_015621473.1  CMP-sialic acid transporter 3

      Conserved Domains (1) summary
      pfam04142
      Location:62 → 347
      Nuc_sug_transp; Nucleotide-sugar transporter

    2. XM_015765989.2 → XP_015621475.1  CMP-sialic acid transporter 3

      Conserved Domains (1) summary
      pfam04142
      Location:62 → 347
      Nuc_sug_transp; Nucleotide-sugar transporter
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5N855.1 GenPept UniProtKB/Swiss-Prot:Q5N855

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