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    LOC4324326 pentatricopeptide repeat-containing protein At1g05600 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324326, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324326
    Gene description
    pentatricopeptide repeat-containing protein At1g05600
    Locus tag
    OSNPB_010913800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (39824902..39826687)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein NRT1/ PTR FAMILY 2.13 Neighboring gene glycine-rich RNA-binding protein 4, mitochondrial Neighboring gene rho GDP-dissociation inhibitor 1 Neighboring gene uncharacterized LOC4324340 Neighboring gene uncharacterized LOC4324341

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At1g05600
    Names
    Os01g0913800
    P0470A12.47
    fertility restorer homologue-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      39824902..39826687
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015769542.2 → XP_015625028.1  pentatricopeptide repeat-containing protein At1g05600

      UniProtKB/TrEMBL
      A2WY90, A3A0V0, Q0JGP1
      Conserved Domains (4) summary
      PLN03218
      Location:156 → 408
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:301 → 323
      PPR; PPR repeat [structural motif]
      pfam13041
      Location:439 → 480
      PPR_2; PPR repeat family
      cl29710
      Location:403 → 428
      PPR; PPR repeat
    Nucleotide Protein
    Heading Accession and Version

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