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    hs2st1.L heparan sulfate 2-O-sulfotransferase 1 L homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 399095, updated on 11-Apr-2024

    Summary

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    Official Symbol
    hs2st1.L
    Official Full Name
    heparan sulfate 2-O-sulfotransferase 1 L homeolog
    Primary source
    Xenbase:XB-GENE-5953205
    Locus tag
    XELAEV_18023362mg
    See related
    EnsemblRapid:ENSXLAG00005012490
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    hs2st; hs2st1
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    Genomic context

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    Location:
    chromosome: 4L
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4L NC_054377.1 (102567337..102645338, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4L NC_030730.1 (97295469..97373066, complement)

    Chromosome 4L - NC_054377.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108714398 Neighboring gene LIM domain only 4, gene 1 L homeolog Neighboring gene selenoprotein F L homeolog Neighboring gene SH3 domain GRB2 like, endophilin B1 L homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Renal agenesis in mice homozygous for a gene trap mutation in the gene encoding heparan sulfate 2-sulfotransferase. Bullock SL, et al. Genes Dev, 1998 Jun 15. PMID 9637690, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables heparan sulfate 2-O-sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables sulfotransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in Golgi membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    heparan sulfate 2-O-sulfotransferase 1
    Names
    heparan sulfate 2-sulfotransferase
    NP_001083748.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001090279.1 → NP_001083748.1  heparan sulfate 2-O-sulfotransferase 1

      See identical proteins and their annotated locations for NP_001083748.1

      Status: PROVISIONAL

      Source sequence(s)
      BC078097
      UniProtKB/Swiss-Prot
      O93336
      UniProtKB/TrEMBL
      A0A974D4X1
      Related
      ENSXLAP00005036648.1, ENSXLAT00005037557.1
      Conserved Domains (1) summary
      pfam03567
      Location:76 → 326
      Sulfotransfer_2; Sulfotransferase family

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054377.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      102567337..102645338 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    O93336.1 GenPept UniProtKB/Swiss-Prot:O93336

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.