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    PHF20 PHD finger protein 20 [ Equus caballus (horse) ]

    Gene ID: 100055019, updated on 8-Mar-2024

    Summary

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    Official Symbol
    PHF20provided by VGNC
    Official Full Name
    PHD finger protein 20provided by VGNC
    Primary source
    VGNC:VGNC:21379
    See related
    Ensembl:ENSECAG00000024820
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Equus caballus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Perissodactyla; Equidae; Equus
    Orthologs
    human mouse all
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    Genomic context

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    See PHF20 in Genome Data Viewer
    Location:
    chromosome: 22
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    103 current EquCab3.0 (GCF_002863925.1) 22 NC_009165.3 (27348357..27489652)
    102 previous assembly EquCab2.0 (GCF_000002305.2) 22 NC_009165.2 (26468105..26592471)

    Chromosome 22 - NC_009165.3Genomic Context describing neighboring genes Neighboring gene RNA binding motif protein 39 Neighboring gene U6 spliceosomal RNA Neighboring gene U6 spliceosomal RNA Neighboring gene SCAN domain containing 1 Neighboring gene cyclic nucleotide binding domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Annotation of the Protein Coding Regions of the Equine Genome. Hestand MS, et al. PLoS One, 2015. PMID 26107351, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of MLL1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of NSL complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PHD finger protein 20
    Names
    PHD finger 20-like protein
    PHD finger protein 20-like protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Equus caballus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference EquCab3.0 Primary Assembly

    Genomic

    1. NC_009165.3 Reference EquCab3.0 Primary Assembly

      Range
      27348357..27489652
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_023626473.1 → XP_023482241.1  PHD finger protein 20

      UniProtKB/TrEMBL
      A0A3Q2HMM2
      Related
      ENSECAP00000022405.3, ENSECAT00000026813.4
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:657 → 700
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:105 → 313
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 68
      MBT; mbt repeat

    2. XM_023626474.1 → XP_023482242.1  PHD finger protein 20

      UniProtKB/TrEMBL
      A0A3Q2HMM2
      Conserved Domains (4) summary
      cd04508
      Location:90 → 135
      TUDOR; Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains. For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to ...
      cd15634
      Location:657 → 700
      PHD_PHF20; PHD finger found in PHD finger protein 20 (PHF20)
      pfam10243
      Location:105 → 313
      MIP-T3; Microtubule-binding protein MIP-T3
      cl17705
      Location:3 → 68
      MBT; mbt repeat
    Nucleotide Protein
    Heading Accession and Version

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