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    BTRC beta-transducin repeat containing E3 ubiquitin protein ligase [ Monodelphis domestica (gray short-tailed opossum) ]

    Gene ID: 100029508, updated on 3-Apr-2024

    Summary

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    Gene symbol
    BTRC
    Gene description
    beta-transducin repeat containing E3 ubiquitin protein ligase
    See related
    Ensembl:ENSMODG00000011788
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Monodelphis domestica
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Didelphimorphia; Didelphidae; Monodelphis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2023_05 current mMonDom1.pri (GCF_027887165.1) 1 NC_077227.1 (115135129..115334563, complement)
    103 previous assembly MonDom5 (GCF_000002295.2) 1 NC_008801.1 (110712639..110910738, complement)

    Chromosome 1 - NC_077227.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103103159 Neighboring gene deleted in primary ciliary dyskinesia homolog (mouse) Neighboring gene DNA polymerase lambda Neighboring gene uncharacterized LOC130455492 Neighboring gene uncharacterized LOC103105164 Neighboring gene uncharacterized LOC103105777

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein dimerization activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    F-box/WD repeat-containing protein 1A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_027887165.1-RS_2023_05

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference mMonDom1.pri

    Genomic

    1. NC_077227.1 Reference mMonDom1.pri

      Range
      115135129..115334563 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_007479150.2 → XP_007479212.1  F-box/WD repeat-containing protein 1A isoform X1

      UniProtKB/TrEMBL
      A0A5F8GTA5, F7CC58
      Related
      ENSMODP00000050619.1
      Conserved Domains (4) summary
      cd00200
      Location:303 → 581
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:306 → 341
      7WD40; WD40 repeat [structural motif]
      pfam12125
      Location:139 → 177
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:181 → 228
      F-box-like

    2. XM_007479144.3 → XP_007479206.1  F-box/WD repeat-containing protein 1A isoform X4

      UniProtKB/TrEMBL
      A0A5F8GIK3, A0A5F8H0D9
      Related
      ENSMODP00000052841.1
      Conserved Domains (4) summary
      cd00200
      Location:267 → 545
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:270 → 305
      7WD40; WD40 repeat [structural motif]
      pfam12125
      Location:103 → 141
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:145 → 192
      F-box-like

    3. XM_007479143.3 → XP_007479205.1  F-box/WD repeat-containing protein 1A isoform X3

      UniProtKB/TrEMBL
      A0A5F8G795, F7CC58
      Related
      ENSMODP00000043276.1
      Conserved Domains (5) summary
      COG2319
      Location:264 → 560
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:277 → 555
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam12125
      Location:113 → 151
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:155 → 202
      F-box-like; F-box-like
      sd00039
      Location:280 → 315
      7WD40; WD40 repeat [structural motif]

    4. XM_007479148.3 → XP_007479210.1  F-box/WD repeat-containing protein 1A isoform X6

      UniProtKB/TrEMBL
      A0A5F8GIK3, A0A5F8HB59
      Related
      ENSMODP00000056850.1
      Conserved Domains (5) summary
      COG2319
      Location:228 → 524
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:241 → 519
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam12125
      Location:77 → 115
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:119 → 166
      F-box-like; F-box-like
      sd00039
      Location:244 → 279
      7WD40; WD40 repeat [structural motif]

    5. XM_056805218.1 → XP_056661196.1  F-box/WD repeat-containing protein 1A isoform X7

    6. XM_007479146.2 → XP_007479208.1  F-box/WD repeat-containing protein 1A isoform X5

      See identical proteins and their annotated locations for XP_007479208.1

      UniProtKB/TrEMBL
      A0A5F8G5Z2, A0A5F8GIK3
      Conserved Domains (5) summary
      COG2319
      Location:243 → 539
      WD40; WD40 repeat [General function prediction only]
      cd00200
      Location:256 → 534
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      pfam12125
      Location:92 → 130
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:134 → 181
      F-box-like; F-box-like
      sd00039
      Location:259 → 294
      7WD40; WD40 repeat [structural motif]

    7. XM_056805186.1 → XP_056661164.1  F-box/WD repeat-containing protein 1A isoform X2

    8. XM_056805176.1 → XP_056661154.1  F-box/WD repeat-containing protein 1A isoform X2

    9. XM_056805239.1 → XP_056661217.1  F-box/WD repeat-containing protein 1A isoform X8

    10. XM_016423553.2 → XP_016279039.1  F-box/WD repeat-containing protein 1A isoform X2

      UniProtKB/TrEMBL
      F7CC58
      Related
      ENSMODP00000014764.3
      Conserved Domains (4) summary
      cd00200
      Location:285 → 563
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:288 → 323
      7WD40; WD40 repeat [structural motif]
      pfam12125
      Location:121 → 159
      Beta-TrCP_D; D domain of beta-TrCP
      pfam12937
      Location:163 → 210
      F-box-like

    11. XM_056805207.1 → XP_056661185.1  F-box/WD repeat-containing protein 1A isoform X7

    12. XM_056805199.1 → XP_056661177.1  F-box/WD repeat-containing protein 1A isoform X5

      UniProtKB/TrEMBL
      A0A5F8G5Z2

    13. XM_016423558.2 → XP_016279044.1  F-box/WD repeat-containing protein 1A isoform X8

      UniProtKB/TrEMBL
      A0A5F8GIK3
    Nucleotide Protein
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