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    LOC392145 exosome component 6 pseudogene [ Homo sapiens (human) ]

    Gene ID: 392145, updated on 8-Nov-2023

    Summary

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    Gene symbol
    LOC392145
    Gene description
    exosome component 6 pseudogene
    See related
    Ensembl:ENSG00000274133
    Gene type
    pseudo
    RefSeq status
    INFERRED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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    Genomic context

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    See LOC392145 in Genome Data Viewer
    Location:
    7q36.1
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (148445810..148446395)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (149627698..149628283)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 7 NC_000007.13 (148142902..148143487)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene contactin associated protein 2 Neighboring gene uncharacterized LOC105375554 Neighboring gene small nucleolar RNA U3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr7:148092562-148093198 Neighboring gene MPRA-validated peak6829 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr7:148175640-148176159 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr7:148198807-148199509 Neighboring gene MPRA-validated peak6830 silencer Neighboring gene uncharacterized LOC124901766 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 26799 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:148264411-148265219 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:148268703-148269902 Neighboring gene Sharpr-MPRA regulatory region 1537 Neighboring gene RNA, 7SL, cytoplasmic 72, pseudogene Neighboring gene ribosomal protein L32 pseudogene 17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Human chromosome 7: DNA sequence and biology. Scherer SW, et al. Science, 2003 May 2. PMID 12690205, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    General gene information

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    Markers

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    Genomic

    1. NG_012770.1 

      Range
      101..686
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      GenBank, FASTA, Sequence Viewer (Graphics)

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      148445810..148446395
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      GenBank, FASTA, Sequence Viewer (Graphics)

    Reference GRCh38.p14 ALT_REF_LOCI_1

    Genomic

    1. NT_187564.1 Reference GRCh38.p14 ALT_REF_LOCI_1

      Range
      229405..229990
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      149627698..149628283
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001126313.1: Suppressed sequence

      Description
      NM_001126313.1: This RefSeq was permanently suppressed because it is now thought that this gene is a pseudogene.
    Nucleotide Protein
    Heading Accession and Version

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